View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_83 (Length: 238)
Name: NF8175_low_83
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_83 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 18312650 - 18312785
Alignment:
| Q |
9 |
ttttttcatcttgctgcatcttgttttatatgactgcttgatttgagaaaaacttaaatcctaacacagtttgtgttttctcaatggcaaacagaattat |
108 |
Q |
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| T |
18312650 |
ttttttaatcttgctgcatcttgttttatatgactgcttgatttgagaaaaacttaaatcctaacacaatttgtgttttctcaatggcaaacagaattat |
18312749 |
T |
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| Q |
109 |
tatagtagatcatacataaacttgcggttctaaatt |
144 |
Q |
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| T |
18312750 |
tatagtagatcatacataaacttgcggttctaaatt |
18312785 |
T |
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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 2783112 - 2783185
Alignment:
| Q |
30 |
tgttttatatgactgcttgatttgagaaaaacttaaatcctaacacagtttgtgttttctcaatggcaaacaga |
103 |
Q |
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| T |
2783112 |
tgttttatatgactgcttgatttgagaaaaagttaaatcctaacacagtttgtgttttctcaatgacaaacaga |
2783185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 2783244 - 2783324
Alignment:
| Q |
106 |
tattatagtagatcatacataaacttgcggttctaaattggagattgccccacttgcattaatgatagtaattaaattgacac |
188 |
Q |
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| T |
2783244 |
tattatagtagaacata--taatcttgcggttctaaattgaagattgccccacttgcattaattatagtacttaaattgacac |
2783324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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