View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_85 (Length: 235)
Name: NF8175_low_85
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_85 |
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| [»] scaffold0092 (1 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 42433 - 42641
Alignment:
| Q |
16 |
acatcagattgactcagtggtcacaatgctaaagcagaagcttcagacgcaacccctgtaagtttttattcttgttttgttcagttttgaaaaattaaac |
115 |
Q |
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| T |
42433 |
acatcagattgactcagtggtctcaatgctaaagcagaagcttcagacgcaaccc----------------ttgttttgttcagttttgaaaaattgaac |
42516 |
T |
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| Q |
116 |
ggcatattttttgtcaacccatttacctgattgttgtctttaacttg-------------------tcaactttgacaaatgggaggtttttgttaatga |
196 |
Q |
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| T |
42517 |
ggcatatttattgtcaacccgtttacctgattgttgcctttaacttgtcattgagtagctactggatcaactttgacaaatgggaggtttttgttaatga |
42616 |
T |
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| Q |
197 |
tgatcgcacacacaccttcatctca |
221 |
Q |
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| T |
42617 |
tgatcgcacacgcaccttcctctca |
42641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 8242 - 8457
Alignment:
| Q |
16 |
acatcagattgactcagtggtcacaatgctaaagcagaagcttcagacgcaacccctgtaagtttttattcttgttttgttcagttttgaaaaattaaac |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
8242 |
acatcagattgactcagtggtcacaatgctaaaacagaagcttcagacacaatccctgtaagtttttattctt----------gttttgaaaaattgaac |
8331 |
T |
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| Q |
116 |
ggcatattttttgtcaacccatttacctgattgttgtctttaacttgtca---------------------actttgacaaatgggaggtttttgttaat |
194 |
Q |
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| T |
8332 |
agaatattttttgtcaa-ccgtttacctgattgttgcctttaacttgtcatcttgagcagctactggatcgactttgacaaatgggaggtttttgttaat |
8430 |
T |
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| Q |
195 |
gatgatcgcacacacaccttcatctca |
221 |
Q |
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| T |
8431 |
gatgatcgcacacgcaccttcctctca |
8457 |
T |
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