View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_86 (Length: 235)
Name: NF8175_low_86
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_86 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3348435 - 3348222
Alignment:
| Q |
1 |
ttaataatcaagtaaaaaacaaataagaaaggatgcattgaatattgagatggaaattaccaggtgaaggaaccgatcgagtagttccaaagaaaagaac |
100 |
Q |
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| T |
3348435 |
ttaataatcaagtaaaaaacaaataagaaaggatgcattgaatattgagatggaaattaccaggtgaaggaaccgatcgagtagttccaaagaaaagaac |
3348336 |
T |
|
| Q |
101 |
gtgatagcctattaaagtgatagctgcaacnnnnnnnnnnnnnnnnnncatttatcaacttaaatagagaagaaacaattattaagtgaagaataaataa |
200 |
Q |
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| T |
3348335 |
gtgatagcctattaaagtgatagctgcaacaaaaaaaaaaaat------atttatcaacttaaatagagaagaaacaattattaagtgaagaataaataa |
3348242 |
T |
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| Q |
201 |
aagaatgcattgatcatatt |
220 |
Q |
| |
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||||||||||||||| |||| |
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| T |
3348241 |
aagaatgcattgatcgtatt |
3348222 |
T |
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