View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_87 (Length: 235)
Name: NF8175_low_87
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_87 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10465330 - 10465096
Alignment:
| Q |
1 |
cggatatgtggacacctcgtgcttctcacgctgatattttttaagctcattcattaatttgagaacttgccaccaacatggtgaaaatggaatctctagg |
100 |
Q |
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| T |
10465330 |
cggatatgtggacacctcgtgcttctcacgctgatattttttaagctcattcattaatttgagaacttgccaccaacatggtgaaaatggaatctctagg |
10465231 |
T |
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| Q |
101 |
tgttgttctttctgtctatacatacgggtcactacagcaggaatttcccttttgtggcccccaagtcttaaatattattggttgggaatgtaaagaaatg |
200 |
Q |
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| T |
10465230 |
tgtggttctttctgtctatacatacgggtcactacagcaggaatttcccttttgtggcccccaagtcttaaatattattggttgggaatgtaaagaaatg |
10465131 |
T |
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| Q |
201 |
tagggatagctaggttttgtattaaatttgaggag |
235 |
Q |
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| T |
10465130 |
tagggatagctaggttttgtattaaatttgaggag |
10465096 |
T |
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