View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_9 (Length: 548)
Name: NF8175_low_9
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 50522688 - 50523220
Alignment:
| Q |
1 |
atgtggattactcaatgagtaatagttttgtcccttatttttattaatgttgagtttaattcatccttagttggaattatccctatctgttacttttcat |
100 |
Q |
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| T |
50522688 |
atgtggattactcaatgagtaatagttttgtcccttatttttattaatgttgagtttaattcatccttagttggaattatccctatctgttacttttcat |
50522787 |
T |
|
| Q |
101 |
tgttggtgtaacagtgaatagcagacatgaatgcggcttcnnnnnnnnnnnngatgccaccggccaagatgggtccatggacagtgaaatcaaggatgag |
200 |
Q |
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| T |
50522788 |
tgttggtgtaacagtgaatagcagacatgaatgcggcttcaaaaataaaaaagatgccaccggccaagatgggaccatggacagtgaaatcaaggatggg |
50522887 |
T |
|
| Q |
201 |
aaatgaaaaagtaattaggatcaaaaaagaacaaaacaaatggtgtagcagacaaagagagttcacaattagtatacaaaagaaaaacattatgccaaca |
300 |
Q |
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| T |
50522888 |
aaatgaaaaagtaatcaggatcaaaaaagaacaaaacaaatggtgtagcagacaaagagagttcacaattagtatacaaaagaaaaacattatgccaaca |
50522987 |
T |
|
| Q |
301 |
tattggcccatgttattttgtccttatgcctaatttgtcagtttgaggacactatcatccaacttaccaactagtagttaaataaggcatgggtgtgttg |
400 |
Q |
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| T |
50522988 |
tattggcccatgttattttgtccttatgcctaatttgtcagtttgaggacactatcatccaacttaccaactagtagttaaataaggcatgggtgtgttg |
50523087 |
T |
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| Q |
401 |
ttgtgatcattttgtagattttgtgctacacttaatatttgaattttggatcggatgtaagtcaatcttacaaaactgatttgtaaatattaatttttct |
500 |
Q |
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| T |
50523088 |
ttgtgatcattttgtagattttgtgctacacttaatatttgaattttgggtcggatgcaagtcaatcttacaaaactgatttgtaaatattaatttttct |
50523187 |
T |
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| Q |
501 |
cgtttaaaaaattatgttcgtgtttgaagttgg |
533 |
Q |
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| T |
50523188 |
cgtttaaaaaattatgttcgtgtttgaagttgg |
50523220 |
T |
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