View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_91 (Length: 227)
Name: NF8175_low_91
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_91 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34791589 - 34791361
Alignment:
| Q |
1 |
tgactaaaaatattgtgtttttaatagaatattgaaagaaagaatcgtaaaattttctctttggttaaggtgaagcagcatgtaatagaacattcttcag |
100 |
Q |
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| T |
34791589 |
tgactaaaaatattgtgtttttaatagaatattgaaagaaagaatcgtaaaattttctctttggttaaggtgaagcagcatgtaatagaacattcttcgg |
34791490 |
T |
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| Q |
101 |
tacgtatgtcttctcaatacaaatatgaagatgcaaaaagctttggaaaaaatcaagttaca--ctaatttttcatacactgtcggtataaaaagttttc |
198 |
Q |
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| T |
34791489 |
tacgtatgtcttctcaatacaaatatgaagatgcaaaaagctttggaaaaaatcaagttacactctaatttttcatacactgtcggtataaaaagttttc |
34791390 |
T |
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| Q |
199 |
gattgtcaataaatcacattcaatcatgt |
227 |
Q |
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| T |
34791389 |
gattgtcaataaatcacatccaatcatgt |
34791361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 35035681 - 35035624
Alignment:
| Q |
168 |
ttttcatacactgtcggtataaaaagttttcgattgtcaataaatcacattcaatcat |
225 |
Q |
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| T |
35035681 |
ttttgatacactgtcggtataaaaaattttacattgtcagtaaatcacaaccaatcat |
35035624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 36853057 - 36853113
Alignment:
| Q |
168 |
ttttcatacactgtcggtataaaaagttttcgattgtcaataaatcacattcaatcat |
225 |
Q |
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| T |
36853057 |
ttttgatacactgtcggtataaaaagtttac-attgtcagtaaatcacaaccaatcat |
36853113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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