View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_low_92 (Length: 223)
Name: NF8175_low_92
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_92 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51729070 - 51728848
Alignment:
| Q |
1 |
caaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51729070 |
caaagtggtggttttgtaatgaaggaatcgaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttaatggaaagaaaaa |
51728971 |
T |
|
| Q |
101 |
gatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatacctttgtacaggtaagaagtacttgtttgtgattcattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51728970 |
gatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatacctttgtacaggtaagaagtacttgtttgtgattcattt |
51728871 |
T |
|
| Q |
201 |
cgcgctttgaaattaaatgaata |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
51728870 |
cgcgctttgaaattaaatgaata |
51728848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 19056744 - 19056891
Alignment:
| Q |
1 |
caaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaa |
100 |
Q |
| |
|
|||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| |||||| || || || |
|
|
| T |
19056744 |
caaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatgggaaaaagaa |
19056843 |
T |
|
| Q |
101 |
gatcaaaaccattttaccagagcctttttgtagcctgttggagtaccc |
148 |
Q |
| |
|
| ||||||||||||| ||||||||||||| |||| ||||||| ||||| |
|
|
| T |
19056844 |
gctcaaaaccattttgccagagcctttttctagcttgttggaataccc |
19056891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 19188455 - 19188308
Alignment:
| Q |
1 |
caaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaa |
100 |
Q |
| |
|
|||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| |||||| || || || |
|
|
| T |
19188455 |
caaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatgggaaaaagaa |
19188356 |
T |
|
| Q |
101 |
gatcaaaaccattttaccagagcctttttgtagcctgttggagtaccc |
148 |
Q |
| |
|
| ||||||||||||| ||||||||||||| |||| ||||||| ||||| |
|
|
| T |
19188355 |
gctcaaaaccattttgccagagcctttttctagcttgttggaataccc |
19188308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University