View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_low_94 (Length: 214)
Name: NF8175_low_94
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_94 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 44627334 - 44627516
Alignment:
| Q |
17 |
agacgatatgcaaatgcggttttatgatcttgttaaccatcttgcttcattggggaaaaggattcctaatgtaggtagacttggtctacaaagttttgag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44627334 |
agacgatatgcaaatgcggttttatgatcttgttaaccatcttgcttcattggggaaaaggattcctaatgtaggtagacttggtctacaaagttttgag |
44627433 |
T |
|
| Q |
117 |
aagtttgagtaggaaatggcagcacaaggtcagaactataatgacatcaagagatctcacaactatgcccttacgttacttgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
44627434 |
aagtttgagtaggaaatggcagcacaaggtcagaactataatgacatcaagagatctcacaactatgcccttgcgtcacttgt |
44627516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 26080574 - 26080738
Alignment:
| Q |
21 |
gatatgcaaatgcggttttatgatcttgttaaccatcttgcttcattggggaaaaggattcctaatgtaggtagacttggtctacaaagttttgagaagt |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||| |||||||||| | ||| ||||| ||||||||||||| || |
|
|
| T |
26080574 |
gatatgcaaatgcggttttatgatgttgttaatcatcttgcttcgttgggtaaaaagattcctaat----gaagatttggttagcaaagttttgagatgt |
26080669 |
T |
|
| Q |
121 |
ttgagtaggaaatggcagcacaaggtcagaactataatgacatcaagagatctcacaactatgccctta |
189 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |||||| || ||||| |||| || ||||||||| |||| |
|
|
| T |
26080670 |
ttgagtaagaaatggcggcacaaggtcagagctataacgaaatcaatagatttcccaactatgctctta |
26080738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University