View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_96 (Length: 210)
Name: NF8175_low_96
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 55664477 - 55664287
Alignment:
| Q |
1 |
tctttattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcatattaatcaaaggtacacgttgtttaacatggagatgtggtgatagtta |
100 |
Q |
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| T |
55664477 |
tctttattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcatattaatcaaaggtacacgttgtttaacatggagatgtggtgatagtta |
55664378 |
T |
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| Q |
101 |
ccattgtagctttgttggtgatatatttagttctctggttacaccaatcaaagtaatagttggactgttaggtgactagaaacccttattt |
191 |
Q |
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| T |
55664377 |
ccattgtagctttgttggtgatatatttagttctctggttacaccaatcaaagtaatagttggactgttaggtgactagaaacccttattt |
55664287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 55636526 - 55636719
Alignment:
| Q |
1 |
tctttattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcatattaatcaaaggt-acacgttgtttaacatggagatgtggtg--atag |
97 |
Q |
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| T |
55636526 |
tctttattgcttatgttgttcttcatgtttgatgtttgggcattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataa |
55636625 |
T |
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| Q |
98 |
ttaccattgtagctttgttggtgatatatttagttctctggttacaccaatcaaagtaatagttggactgttaggtgactagaaacccttattt |
191 |
Q |
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| T |
55636626 |
taaccattgtagtcttgttgatgatatattcagttcacaggttacaccaatcagagtattagttgggttgttcggtgaccgtaaacccttattt |
55636719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 52983958 - 52983850
Alignment:
| Q |
39 |
ggtatcacatgcatattaatcaaaggtacacgttgtttaacatggagatgtggtg--atagttaccattgtagctttgttggtgatatatttagttctct |
136 |
Q |
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| T |
52983958 |
ggtatcacatgcatataaattgaagctacatgttgtttaaaatggagatgtggtgctatagtaaccattgcagtcttcttgatggtatatttagttctca |
52983859 |
T |
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| Q |
137 |
ggttacacc |
145 |
Q |
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| T |
52983858 |
ggttacacc |
52983850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 52984737 - 52984695
Alignment:
| Q |
1 |
tctttattgctcatgcttttcttcaagtttgatgtttgggtat |
43 |
Q |
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| T |
52984737 |
tctttattgcttatgcgtttcttctagtttgatgtttgggtat |
52984695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 9890821 - 9890998
Alignment:
| Q |
1 |
tctttattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcatattaatcaaaggtacacgttgtttaacatggagatgtggtg--atagt |
98 |
Q |
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| T |
9890821 |
tctttattgcttatgcttttcttcaagtttgatgcctgggta-cacatgcatataaattgaaactacatgttgtttaacatggagatgttgtgcaataat |
9890919 |
T |
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| Q |
99 |
taccattgtagctttgttggtgatatatttagttctctggttacaccaatcaaagtaatagttggactgttaggtgact |
177 |
Q |
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|| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9890920 |
aactattgtagtcttgttgatgatatatttagttctctggttacaccaatcaaagtaatagttggattgttaggtgact |
9890998 |
T |
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