View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8176_high_2 (Length: 242)
Name: NF8176_high_2
Description: NF8176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8176_high_2 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 45643076 - 45642855
Alignment:
| Q |
21 |
gcacatttggcatgaaactctttgttaaggttaagccttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttccaatcgcac |
120 |
Q |
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| T |
45643076 |
gcacatttggcatgaaactctttgttaaggttaagccttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttccgatcgcac |
45642977 |
T |
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| Q |
121 |
ccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatcttcagctactaccatctcaccaactgttgctttctttttcactgtttcctgg |
220 |
Q |
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| T |
45642976 |
ccctgccgcaacaaccaccaccactactcctaccatacaaagtgcatcttcagctactaccatctcaccaactgttgctttctttttcactgtttcctgg |
45642877 |
T |
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| Q |
221 |
atcttgatccgtcatatattag |
242 |
Q |
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| T |
45642876 |
atcttgatccatcatatattag |
45642855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 45650292 - 45650117
Alignment:
| Q |
60 |
cttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacaca |
159 |
Q |
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| T |
45650292 |
cttcttctgctccttctgcaacaccatcgccatcagggaaaggttcaccttctgatggcacccctgctgcaac---caccaccactactccttccacaca |
45650196 |
T |
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| Q |
160 |
aagtgcatcttcagctactaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatccgtcatata |
238 |
Q |
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| T |
45650195 |
aagtgcatcttcatctactagtatctcaccaattgttgctttatttttcactgtttcatggatcttgatcagttatata |
45650117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 45703423 - 45703573
Alignment:
| Q |
76 |
tgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatcttcagct |
175 |
Q |
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| T |
45703423 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
45703519 |
T |
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| Q |
176 |
actaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatc |
229 |
Q |
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| T |
45703520 |
acttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatc |
45703573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 45887229 - 45887379
Alignment:
| Q |
76 |
tgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatcttcagct |
175 |
Q |
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| T |
45887229 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
45887325 |
T |
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| Q |
176 |
actaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatc |
229 |
Q |
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||| |||||||||| |||||| |||||||| | |||||| |||||||||||| |
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| T |
45887326 |
acttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatc |
45887379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 45887123 - 45887213
Alignment:
| Q |
57 |
cttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttc---caatcgcacccctgccgcaacaaccaccaccac |
144 |
Q |
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| T |
45887123 |
cttcttctgctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccac |
45887213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 45703317 - 45703407
Alignment:
| Q |
57 |
cttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttc---caatcgcacccctgccgcaacaaccaccaccac |
144 |
Q |
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| T |
45703317 |
cttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccac |
45703407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 1193589 - 1193689
Alignment:
| Q |
132 |
caaccaccaccactactcctaccacacaaagtgcatcttcagctactaccatctcaccaactgttg---ctttctttttcactgtttcctggatcttgat |
228 |
Q |
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| T |
1193589 |
caactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgcttctttatttttcattgtttcatggatcttgat |
1193688 |
T |
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| Q |
229 |
c |
229 |
Q |
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| T |
1193689 |
c |
1193689 |
T |
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