View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8176_low_1 (Length: 432)

Name: NF8176_low_1
Description: NF8176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8176_low_1
NF8176_low_1
[»] chr6 (5 HSPs)
chr6 (1-415)||(5978572-5978986)
chr6 (161-396)||(33575734-33575969)
chr6 (191-309)||(33568635-33568753)
chr6 (13-123)||(33568821-33568931)
chr6 (1-101)||(34861982-34862082)
[»] chr3 (1 HSPs)
chr3 (1-415)||(36339660-36340074)
[»] scaffold0707 (2 HSPs)
scaffold0707 (191-309)||(5029-5147)
scaffold0707 (13-123)||(5215-5325)
[»] chr7 (3 HSPs)
chr7 (65-108)||(24016641-24016684)
chr7 (65-119)||(26256616-26256670)
chr7 (74-118)||(24002041-24002085)


Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 5978986 - 5978572
Alignment:
Q  1 cagaacccgaagagatggctcaacgcatggcacctcattaaaatcctttggaagcaaaagccggttgtacgtctccgttgaaagatcaagagaagcaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5978986 cagaacccgaagagatggctcaacgcatggcacctcattaaaatcctttggaagcaaaagccggttgtacgtctctgttgaaagatcaagagaagcaatc 5978887  T
Q  101 acaaattgctgaacgtgaggaattgaagcttgaactgtttctccatcagaaagtccaacatagtcaccatgaatagctagccaattaaccgttccactca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5978886 acaaattgctgaacgtgaggaattgaagcttgaactgtttctccatcagaaagtccaacatagtcaccgtgaatagctagccaattaaccgttccactca 5978787  T
Q  201 aatgcacaccatcattcccgataagaggaaccaaaggaaaattttgaatctctctccaacaaaaatcacccaaactgaaaaccctcaccttgcttctcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5978786 aatgcacaccatcattcccgataagaggaaccaaaggaaaactttgaatctctctccaacaaaaatcacccaaactgaaaaccctcaccttgcttctcca 5978687  T
Q  301 taaaccttcggtctcggtctctttctcttcattactttctgtattaagtgccactaccttgtatgttccagttaaataatcacaaccgaaactgaacttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5978686 taaaccttcggtctcggtctctttctcttcattactttctgtattaagtgccactaccttgtatgttccagttaaataatcacaaccgaaactgaacttg 5978587  T
Q  401 aaagggcccaataaa 415  Q
    |||||||||||||||    
T  5978586 aaagggcccaataaa 5978572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 161 - 396
Target Start/End: Complemental strand, 33575969 - 33575734
Alignment:
Q  161 tagtcaccatgaatagctagccaattaaccgttccactcaaatgcacaccatcattcccgataagaggaaccaaaggaaaattttgaatctctctccaac 260  Q
    |||||||  |||||||||| ||| ||||  |||||||| ||||| ||||||||||| || | || |||||| ||||| ||| || |||| | ||||||||    
T  33575969 tagtcactgtgaatagctaaccagttaatagttccactaaaatgaacaccatcatttcccaaaataggaacgaaagggaaacttcgaatatttctccaac 33575870  T
Q  261 aaaaatcacccaaactgaaaaccctcaccttgcttctccataaaccttcggtctcggtctctttctcttcattactttctgtattaagtgccactacctt 360  Q
    ||  ||||||| || |||||||  | ||||||||||||||||||| || | ||||| ||||||| |||| |||  |  || ||| |||||||||||||||    
T  33575869 aattatcacccgaattgaaaactttaaccttgcttctccataaacttttgttctcgatctctttttctttatttttacctatatgaagtgccactacctt 33575770  T
Q  361 gtatgttccagttaaataatcacaaccgaaactgaa 396  Q
    ||| ||||| ||||||||||||||||| | ||||||    
T  33575769 gtaagttccggttaaataatcacaaccaacactgaa 33575734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 33568753 - 33568635
Alignment:
Q  191 gttccactcaaatgcacaccatcattcccgataagaggaaccaaaggaaaattttgaatctctctccaacaaaaatcacccaaactgaaaaccctcacct 290  Q
    ||||| || |||||||| || ||||| |  ||| |||||||||  |||||| ||||||| | ||||||||||  |||||||||||||||||| | |||||    
T  33568753 gttcctctaaaatgcacgccttcattacaaatatgaggaaccattggaaaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacct 33568654  T
Q  291 tgcttctccataaaccttc 309  Q
       ||||||||||||||||    
T  33568653 catttctccataaaccttc 33568635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 33568931 - 33568821
Alignment:
Q  13 agatggctcaacgcatggcacctcattaaaatcctttggaagcaaaagccggttgtacgtctccgttgaaagatcaagagaagcaatcacaaattgctga 112  Q
    ||||||| | || |||||||||||||||||| |||| ||||||||||   |  |||| |||||||  ||||||||||| ||| ||||||||||  ||| |    
T  33568931 agatggcaccacacatggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaaaagctta 33568832  T
Q  113 acgtgaggaat 123  Q
    || ||||||||    
T  33568831 acatgaggaat 33568821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34861982 - 34862082
Alignment:
Q  1 cagaacccgaagagatggctcaacgcatggcacctcattaaaatcctttggaagcaaaagccggttgtacgtctccgttgaaagatcaagagaagcaatc 100  Q
    ||||||||||||| |||||||| | ||||||| ||| |||||| |||| |||||||| |     ||||| ||||| || ||||||||||| |||||||||    
T  34861982 cagaacccgaagatatggctcagcacatggcaactctttaaaacccttgggaagcaacaaatatttgtatgtctcggtggaaagatcaagcgaagcaatc 34862081  T
Q  101 a 101  Q
    |    
T  34862082 a 34862082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 36340074 - 36339660
Alignment:
Q  1 cagaacccgaagagatggctcaacgcatggcacctcattaaaatcctttggaagcaaaagccggttgtacgtctccgttgaaagatcaagagaagcaatc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||| |    |||||||||| | |  |||| |||||||| ||||||||||| ||| |||||    
T  36340074 cagaacccgaagagatggctcaacgcatggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaagatcaagcgaaacaatc 36339975  T
Q  101 acaaattgctgaacgtgaggaattgaagcttgaactgtttctccatcagaaagtccaacatagtcaccatgaatagctagccaattaaccgttccactca 200  Q
    || ||||||| |||  |||||||  |||||| |  ||||||||||  |  || |   ||  |||| |||  || ||| | ||| ||||  | ||||||||    
T  36339974 accaattgctcaacaagaggaatataagctttacttgtttctccacaatcaattgatacgaagtcgccagaaagagccaaccagttaatagctccactca 36339875  T
Q  201 aatgcacaccatcattcccgataagaggaaccaaaggaaaattttgaatctctctccaacaaaaatcacccaaactgaaaaccctcaccttgcttctcca 300  Q
    ||||||||||||||||||  ||||||||||||||||| ||| ||||||| | ||||||||||  |||||| ||||| |||||   |||||||||||||||    
T  36339874 aatgcacaccatcattccatataagaggaaccaaagggaaactttgaatatatctccaacaattatcaccaaaactaaaaactgccaccttgcttctcca 36339775  T
Q  301 taaaccttcggtctcggtctctttctcttcattactttctgtattaagtgccactaccttgtatgttccagttaaataatcacaaccgaaactgaacttg 400  Q
    ||||| |||| ||||   |||| |||||||||| ||| |||||| ||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||    
T  36339774 taaactttcgttctctaactctctctcttcatttcttcctgtatgaagcgccactaccttgtaagttccagttaaacgatcacaaccaaaactgaacttg 36339675  T
Q  401 aaagggcccaataaa 415  Q
    |||||||||||||||    
T  36339674 aaagggcccaataaa 36339660  T

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Target: scaffold0707 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 5147 - 5029
Alignment:
Q  191 gttccactcaaatgcacaccatcattcccgataagaggaaccaaaggaaaattttgaatctctctccaacaaaaatcacccaaactgaaaaccctcacct 290  Q
    ||||| || |||||||| || ||||| |  ||| |||||||||  |||||| ||||||| | ||||||||||  |||||||||||||||||| | |||||    
T  5147 gttcctctaaaatgcacgccttcattacaaatatgaggaaccattggaaaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacct 5048  T
Q  291 tgcttctccataaaccttc 309  Q
       ||||||||||||||||    
T  5047 catttctccataaaccttc 5029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 5325 - 5215
Alignment:
Q  13 agatggctcaacgcatggcacctcattaaaatcctttggaagcaaaagccggttgtacgtctccgttgaaagatcaagagaagcaatcacaaattgctga 112  Q
    ||||||| | || |||||||||||||||||| |||| ||||||||||   |  |||| |||||||  ||||||||||| ||| ||||||||||  ||| |    
T  5325 agatggcaccacacatggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaaaagctta 5226  T
Q  113 acgtgaggaat 123  Q
    || ||||||||    
T  5225 acatgaggaat 5215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 24016684 - 24016641
Alignment:
Q  65 ttgtacgtctccgttgaaagatcaagagaagcaatcacaaattg 108  Q
    ||||| |||||||| ||||||||||||||| |||||||||||||    
T  24016684 ttgtatgtctccgtcgaaagatcaagagaaacaatcacaaattg 24016641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 26256670 - 26256616
Alignment:
Q  65 ttgtacgtctccgttgaaagatcaagagaagcaatcacaaattgctgaacgtgag 119  Q
    ||||| |||||||||||||||||||| |||  |||||||||||||| ||| ||||    
T  26256670 ttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaacatgag 26256616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 24002085 - 24002041
Alignment:
Q  74 tccgttgaaagatcaagagaagcaatcacaaattgctgaacgtga 118  Q
    ||||||||||| ||||| ||| ||||||||||||||| |||||||    
T  24002085 tccgttgaaaggtcaagtgaaacaatcacaaattgctcaacgtga 24002041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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