View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_high_1 (Length: 448)
Name: NF8177_high_1
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 42685964 - 42685554
Alignment:
| Q |
15 |
catacattacttttaaggcaagctcggacgtagcctttcttgggtgggcacttggaatgatacacagaatgatataataacactgtttgttgcagaacca |
114 |
Q |
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| T |
42685964 |
catacattacttttaaggcaagctcggacgtagcctttcttgggtgggcacttggaatgatacacagaatgatataataacactgtttgttgcagaacca |
42685865 |
T |
|
| Q |
115 |
aatcnnnnnnnggaaaagttaagtgatgaatgaagcaaatcttcaagatattataaatatagatatatagcagcatgtaccgtatgtgccatcatcctct |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42685864 |
aatcaaaaaaaggaaaagttaagtgatgaatgaagcaaatcttcaagatattataaatatagctatatagcagcatgtaccgtatgtgccatcatcctct |
42685765 |
T |
|
| Q |
215 |
cttctccagtatctttgtaacagtaaatctcttggtttcatacccctacacatatttgatgagataacattgataaatgtcactagtattaaaacatgtt |
314 |
Q |
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| T |
42685764 |
cttctccagtatctttgtaacagtaaatctcttggtttcatacccctacacatatttgatgagataacattgataaatgtcactagtattaaaacatgtt |
42685665 |
T |
|
| Q |
315 |
aattagtcggtgaatatataatatgtggattagtactacgtaccatggcagccaatcattgtacaactggaggtgaatgatatcagtatgaccatctatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42685664 |
aattagtcggtgaatatataatatgtggattagtactacgtaccatggcagccaatcattgtacaactggaggtgaatgatatcagtatgaccatctatg |
42685565 |
T |
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| Q |
415 |
tgatcaaccac |
425 |
Q |
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| T |
42685564 |
tgatcaaccac |
42685554 |
T |
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