View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8177_high_11 (Length: 263)

Name: NF8177_high_11
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8177_high_11
NF8177_high_11
[»] chr6 (9 HSPs)
chr6 (1-246)||(8753023-8753261)
chr6 (1-188)||(32737203-32737390)
chr6 (1-186)||(7093681-7093866)
chr6 (1-205)||(24795242-24795443)
chr6 (103-185)||(12912411-12912493)
chr6 (4-152)||(6029088-6029236)
chr6 (105-185)||(24393773-24393853)
chr6 (98-173)||(18972783-18972858)
chr6 (80-145)||(30987203-30987268)
[»] chr7 (16 HSPs)
chr7 (1-237)||(41767857-41768093)
chr7 (1-207)||(19294478-19294685)
chr7 (1-194)||(5899882-5900074)
chr7 (109-237)||(15674137-15674265)
chr7 (1-186)||(19323983-19324168)
chr7 (1-186)||(32575228-32575413)
chr7 (1-205)||(18299586-18299790)
chr7 (1-186)||(38141998-38142183)
chr7 (1-186)||(29126015-29126198)
chr7 (1-186)||(15669450-15669635)
chr7 (1-186)||(29626672-29626857)
chr7 (98-152)||(8123980-8124034)
chr7 (103-173)||(40871477-40871547)
chr7 (80-188)||(17194040-17194148)
chr7 (80-152)||(40858214-40858286)
chr7 (94-131)||(31034240-31034277)
[»] chr8 (12 HSPs)
chr8 (1-188)||(33574257-33574444)
chr8 (92-237)||(45103835-45103980)
chr8 (4-185)||(9932257-9932438)
chr8 (80-185)||(25582742-25582847)
chr8 (103-185)||(13089938-13090020)
chr8 (114-191)||(24503932-24504009)
chr8 (98-185)||(45540177-45540264)
chr8 (103-173)||(4034464-4034534)
chr8 (114-191)||(8444405-8444482)
chr8 (92-168)||(15729321-15729397)
chr8 (98-184)||(13781006-13781091)
chr8 (89-133)||(13334623-13334667)
[»] chr3 (8 HSPs)
chr3 (4-207)||(20692217-20692418)
chr3 (1-205)||(53459048-53459252)
chr3 (15-190)||(28432662-28432837)
chr3 (4-185)||(10436592-10436773)
chr3 (98-170)||(20406231-20406303)
chr3 (80-174)||(26900397-26900491)
chr3 (91-168)||(14854439-14854516)
chr3 (80-152)||(15029915-15029987)
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-186)||(8859-9044)
[»] chr4 (17 HSPs)
chr4 (12-112)||(54573083-54573183)
chr4 (1-186)||(40345943-40346128)
chr4 (1-182)||(50771564-50771745)
chr4 (98-191)||(7743434-7743527)
chr4 (1-186)||(30598390-30598575)
chr4 (80-185)||(40850648-40850753)
chr4 (7-191)||(43499068-43499252)
chr4 (98-185)||(9896657-9896744)
chr4 (80-170)||(47590631-47590721)
chr4 (80-185)||(56024879-56024984)
chr4 (7-191)||(36651886-36652070)
chr4 (7-191)||(42718341-42718525)
chr4 (98-170)||(48640586-48640658)
chr4 (82-188)||(20401589-20401694)
chr4 (82-128)||(53584950-53584996)
chr4 (104-185)||(37870809-37870890)
chr4 (168-237)||(54573185-54573254)
[»] chr1 (12 HSPs)
chr1 (3-188)||(16541034-16541218)
chr1 (1-186)||(15759716-15759901)
chr1 (4-185)||(20505403-20505584)
chr1 (4-185)||(26676657-26676838)
chr1 (80-188)||(33676654-33676762)
chr1 (98-188)||(28756636-28756726)
chr1 (80-185)||(46731903-46732008)
chr1 (103-185)||(34549218-34549300)
chr1 (98-184)||(52022621-52022707)
chr1 (114-191)||(4532232-4532309)
chr1 (80-172)||(31911722-31911814)
chr1 (122-185)||(33936313-33936376)
[»] chr5 (7 HSPs)
chr5 (1-186)||(25982338-25982523)
chr5 (1-174)||(40973443-40973616)
chr5 (7-191)||(19021161-19021345)
chr5 (4-170)||(26369111-26369277)
chr5 (123-188)||(33696985-33697050)
chr5 (146-205)||(19616690-19616748)
chr5 (115-191)||(22639438-22639514)
[»] chr2 (9 HSPs)
chr2 (7-185)||(6764191-6764369)
chr2 (80-185)||(3044174-3044279)
chr2 (103-170)||(7901140-7901207)
chr2 (7-191)||(12410558-12410742)
chr2 (7-191)||(12422618-12422802)
chr2 (80-185)||(2380782-2380887)
chr2 (7-191)||(37647736-37647920)
chr2 (114-185)||(27271517-27271588)
chr2 (103-173)||(11031645-11031715)
[»] scaffold0300 (1 HSPs)
scaffold0300 (98-191)||(9439-9532)
[»] scaffold0041 (1 HSPs)
scaffold0041 (103-173)||(94735-94805)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 8753261 - 8753023
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8753261 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 8753162  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttaggcattcattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  8753161 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccattaccttgtttgggcatccattt 8753062  T
Q  201 gtaatagaagtcaagacacttggcctcttttgttttggattctgtg 246  Q
    ||||||||||||||       ||||||||||||||||||| |||||    
T  8753061 gtaatagaagtcaa-------ggcctcttttgttttggatcctgtg 8753023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 32737390 - 32737203
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    ||||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||| |||||||| ||||  | |||||||||||||||||||||  ||    
T  32737390 ctcatatggctatcttgtgtgtgagtgatttggattgaaagaaacgctcgggtctttcaccaaaaggaggcatcacttgatcaattactcgacaaaggta 32737291  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgttt 188  Q
    |||||||||| |||  |||| | ||||| ||| | ||||||||||||| || ||||||||||||| ||||||| |  |||||||||||    
T  32737290 aacttcaatcattcaagtggctcaaagccaattgccctagctttgtttacttttatcatttttggaggttgaatcacttaccttgttt 32737203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 7093681 - 7093866
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||| ||| ||||||| | |||||  ||||| |  |   ||||||||| || |||||||    
T  7093681 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcaggtctttcatcaaaaagaggcctcgttcattcaattactagataaaatta 7093780  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| |||||||||| ||||||| ||||| ||| || || ||||| |||||||||||||| |||||||||    
T  7093781 aacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgt 7093866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 24795443 - 24795242
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctc-gggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatt 99  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||| || | |||||| ||||||||  |||| |  || |||||||||   | ||||||    
T  24795443 ctcatatggctttcttgtgtgtgggtgatttggattgaaagaaacgttcagagtctttcaccaaaag-tggcctcgtttcatcaattac---ataaaatt 24795348  T
Q  100 aaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttaggcattcatt 199  Q
    ||| ||||||| | ||  ||| |||| ||||| ||||||| |||| |||| || ||  |||| |||||||||||||| ||||||||||| || ||| ||     
T  24795347 aaatttcaatcatactactggctgaatgcgaaccgtcctaactttattttttcctactatttgtggtggttgaaccctttaccttgtttgggtatttata 24795248  T
Q  200 tgtaat 205  Q
    ||||||    
T  24795247 tgtaat 24795242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 12912493 - 12912411
Alignment:
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||||||||| ||||||| |||| || ||||||||||| ||||||||||| || ||||  ||||||||||| || ||||||||    
T  12912493 cttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttaccttg 12912411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 6029088 - 6029236
Alignment:
Q  4 atatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaa-agaaggccactcttgatcaattactcgacaaaattaaa 102  Q
    |||||| | ||||||||||||||||| ||| | ||||| || |||||||| ||| |||||| ||||| |  |  || ||||||| || || ||| ||||     
T  6029088 atatggttatcttgtgtttgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaag-cttcgattaatcaattgctagataaagttaag 6029186  T
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctc 152  Q
    ||||||||||  | |||| ||||||||||||||||||| |||||||||||    
T  6029187 cttcaatcttattagtggctgaaagcgaatcgtcctagttttgttttctc 6029236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 24393773 - 24393853
Alignment:
Q  105 tcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||||||| ||||||| ||||||  ||||||||||| ||||||||||| || ||||  ||||||||||| || ||||||||    
T  24393773 tcaatcttactggtggctgaaagtaaatcgtcctagttttgttttctcctaccattcgtggtggttgaatcctttaccttg 24393853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 18972858 - 18972783
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaa 173  Q
    |||| |||||||||| || |||| ||||||| ||||||||||| ||||||||||| || ||||  |||||||||||    
T  18972858 ttaagcttcaatcttactcgtggctgaaagcaaatcgtcctagttttgttttctcctaccattcatggtggttgaa 18972783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 30987268 - 30987203
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttg 145  Q
    |||||||||| || ||||||||||||||||| |  |||||| ||||||| || |||||||||||||    
T  30987268 atcaattactagataaaattaaacttcaatcatattggtggctgaaagcaaaccgtcctagctttg 30987203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41768093 - 41767857
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41768093 ctcatatggctttcttgtgtttgggtgatttggatcgaaagaaacactcggatctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 41767994  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttaggcattcattt 200  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||| | ||| |    
T  41767993 aacttcaatctttctgatggctgaaagcgaatcgtcctagctttgttttctcttataattttttgtggttgaacccattaccttgtttgggcgtccatct 41767894  T
Q  201 gtaatagaagtcaagacacttggcctcttttgttttg 237  Q
    |||||||  |||  | ||||||||| |||||||||||    
T  41767893 gtaataggggtctcggcacttggccacttttgttttg 41767857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 19294478 - 19294685
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19294478 ctcatatgactttcttgtgtttgggtgatttggattgaaagaaacgctcgggtctttaaccaaaagaaggacactcttgatcaattactcgacaaaatta 19294577  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaaccc-gttaccttgtttaggcattcatt 199  Q
    ||| |||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||  |||    
T  19294578 aacgtcaatctttctaatggctgaatgcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccttttaccttgtttgggcatctatt 19294677  T
Q  200 tgtaatag 207  Q
    | ||||||    
T  19294678 tataatag 19294685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5900074 - 5899882
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    ||||||| || ||||||||| ||||| || | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||||||||    
T  5900074 ctcatatagcattcttgtgtgtgggtaatttagatcgaaagaaacgctcgggtctttaaccaaaa-aaggccacttttgatcaattattcgtcaaaatta 5899976  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttaggcat 194  Q
    | |||||||||| || || | |||||||||||||||||||||||  ||||||||||| ||||||||||||||| || | |||||||||||||||    
T  5899975 agcttcaatcttactagttgctgaaagcgaatcgtcctagctttagtttctcttatcgtttttggtggttgaatccatcaccttgtttaggcat 5899882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 15674137 - 15674265
Alignment:
Q  109 tctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttaggcattcatttgtaataga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||     
T  15674137 tctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttcaacccattaccttgtttgggcatccatctgtaatagg 15674236  T
Q  209 agtcaagacacttggcctcttttgttttg 237  Q
     |||  | ||||||||| |||||||||||    
T  15674237 ggtctcggcacttggccacttttgttttg 15674265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 19323983 - 19324168
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| | |||||  ||||| |  |  |||||||||| || |||||||    
T  19323983 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaatta 19324082  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | | ||||| |||||||||| ||||||| ||||| ||| || || ||||| |||||||||||||| |||||||||    
T  19324083 aacttcaatcataccggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgt 19324168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 32575228 - 32575413
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||| | |||||  ||||| |  |  |||||||||| || |||||||    
T  32575228 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaatta 32575327  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| |||||||||| ||||||| ||||| ||| || || ||||| |||||||||||||| |||||||||    
T  32575328 aacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgt 32575413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 18299790 - 18299586
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||| | |||||  ||||| |  |  |||||||||| || |||||||    
T  18299790 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaatcgctcgggtctttcatcaaaaagaggcctcgttccatcaattactagataaaatta 18299691  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttaggcattcattt 200  Q
    |||||||||| | ||||||| |||||| ||| ||||||||||||| ||| || || ||||| |||||||||||||| ||||||| | | || ||| ||||    
T  18299690 aacttcaatcatactggtggctgaaagggaaccgtcctagctttgctttttcctaccatttgtggtggttgaaccctttaccttttctgggtatttattt 18299591  T
Q  201 gtaat 205  Q
    |||||    
T  18299590 gtaat 18299586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 38141998 - 38142183
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||| | |||||  ||||| |  |   ||||||| | || |||||||    
T  38141998 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcattcaattattagataaaatta 38142097  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| |||||||||| ||||||| ||||| ||| || || ||||| |||||||||||||| |||||||||    
T  38142098 aacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgt 38142183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 29126198 - 29126015
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||| ||||||||||| | |||||  ||||| |  |  |||||||||| || |||||||    
T  29126198 ctcatatggctttcttgtgt--gggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaatta 29126101  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    || ||||||| | ||||||| |||||||||| ||||||| ||||| ||| || || ||||| |||||||||||||| |||||||||    
T  29126100 aatttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgt 29126015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 15669450 - 15669635
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| | ||| ||||||||| |||||||||||   |||||  |||||    |  |||||||||| || |||||||    
T  15669450 ctcatatggctttcttgtgtgtgggtgatttcgatagaaagaaacactcgggtctttcttcaaaaagaggccttgttcaatcaattactagataaaatta 15669549  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| |||||||||| ||||||| ||||| ||| || || ||||| |||||||||||||| |||||||||    
T  15669550 aacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgt 15669635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 29626672 - 29626857
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||| ||||| ||||| | |||||  ||||| |  |   ||||||||| || |||||||    
T  29626672 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcggatctttcatcaaaaagaggcctcgttcattcaattacttgataaaatta 29626771  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||  | ||| ||| |||||||||| ||||||| ||||| ||| || || ||||| |||||||||||||| |||||||||    
T  29626772 aacttcaataatactgatggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgt 29626857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 8123980 - 8124034
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctc 152  Q
    |||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  8123980 ttaagcttcaatcttactggtggttgaaagctaatcgtcctagttttgttttctc 8124034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 40871547 - 40871477
Alignment:
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaa 173  Q
    |||||||||| ||||||| |||| || ||||||||||| ||||||||||| || ||||  |||||||||||    
T  40871547 cttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaa 40871477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 17194148 - 17194040
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgtt 179  Q
    ||||||| || || ||| |||| |||||||||  ||||||| ||||||  ||||||| ||| |||||| |||| || ||||  ||||||||||| || ||    
T  17194148 atcaattgctagataaagttaagcttcaatctcactggtggctgaaagaaaatcgtcatagttttgttctctcctaccattcgtggtggttgaatccttt 17194049  T
Q  180 accttgttt 188  Q
    |||||||||    
T  17194048 accttgttt 17194040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 40858286 - 40858214
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctc 152  Q
    ||||||| || || ||| |||| |||||||||| ||| ||| ||||||| ||||||||||| |||||||||||    
T  40858286 atcaattgctagataaagttaagcttcaatcttactgatggctgaaagctaatcgtcctagttttgttttctc 40858214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 31034240 - 31034277
Alignment:
Q  94 aaaattaaacttcaatctttctggtggttgaaagcgaa 131  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  31034240 aaaattaaacttaaatctttttggtggttgaaagcgaa 31034277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 33574444 - 33574257
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  33574444 ctcatatggctttcttgtatttgggtgatctggatcgaaagaaacgctcaggcctttaaccaaaagaaggctactcttgatcaattactcgacaaaatta 33574345  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgttt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  33574344 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcattttttgtggttgaacccattaccttgttt 33574257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 45103980 - 45103835
Alignment:
Q  92 acaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||    
T  45103980 acaacattaaacttcaatctttctgatggttgaaagcgaatcgtcatagctttgttttctcttatcatttttggtggttgaactcattatcttgtttggg 45103881  T
Q  192 cattcatttgtaatagaagtcaagacacttggcctcttttgttttg 237  Q
    ||| ||| ||||||||  |||  | ||||||||| |||||||||||    
T  45103880 catccatctgtaataggggtctcggcacttggccacttttgttttg 45103835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 9932438 - 9932257
Alignment:
Q  4 atatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaa-agaaggccactcttgatcaattactcgacaaaattaaa 102  Q
    |||||| | |||||||| |||||||| ||| | ||||| || |||||||| ||| |||||| ||||| |  |  || ||||||| || || ||| ||||     
T  9932438 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaag-cttcgattaatcaattgctagataaagttaag 9932340  T
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||| ||||||||| || || ||||||||    
T  9932339 cttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 9932257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 25582847 - 25582742
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgtt 179  Q
    ||||||| || || ||| |||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||| ||||||||| || || ||    
T  25582847 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatccttt 25582748  T
Q  180 accttg 185  Q
    ||||||    
T  25582747 accttg 25582742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 13090020 - 13089938
Alignment:
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||||||||| ||||||| |||| || ||||||||||| ||||||||||| || ||||| ||||||||||| || ||||||||    
T  13090020 cttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccatttatggtggttgaatcctttaccttg 13089938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 24503932 - 24504009
Alignment:
Q  114 ctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||||||||||||||||| || ||||| ||||||||||| || ||||  |||||| ||||||| ||||||||||||||    
T  24503932 ctggtggttgaaagcgaaccgacctagttttgttttctcctaccattcatggtggctgaaccctttaccttgtttagg 24504009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 45540177 - 45540264
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    ||||||||||||| | ||||||| |||||||||| || | ||| ||||||||||| || ||||  |||||||||||||| ||||||||    
T  45540177 ttaaacttcaatcatactggtggctgaaagcgaaccgccttagttttgttttctcctaccattcatggtggttgaaccctttaccttg 45540264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 4034534 - 4034464
Alignment:
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaa 173  Q
    |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || ||||  |||||||||||    
T  4034534 cttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcatggtggttgaa 4034464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 8444482 - 8444405
Alignment:
Q  114 ctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    ||||||| ||||||||||||| ||||| |||||||||||||| ||||  |||| ||||||| | |||||||| |||||    
T  8444482 ctggtggctgaaagcgaatcgacctagttttgttttctcttaccattcatggttgttgaactctttaccttgcttagg 8444405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 15729321 - 15729397
Alignment:
Q  92 acaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtgg 168  Q
    ||||||||||||||||||| |  |||||| ||||||| ||||||||||  |||| |||  |||||||||| ||||||    
T  15729321 acaaaattaaacttcaatcatattggtggctgaaagcaaatcgtcctaattttgattttacttatcatttgtggtgg 15729397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 13781091 - 13781006
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttacctt 184  Q
    |||| |||||||||| ||| ||| ||||||| ||||||||||  ||||||||||| || |||| ||||||||| || || |||||||    
T  13781091 ttaagcttcaatcttactg-tggctgaaagcaaatcgtcctaattttgttttctcctaccattcttggtggttaaatcctttacctt 13781006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 13334623 - 13334667
Alignment:
Q  89 tcgacaaaattaaacttcaatctttctggtggttgaaagcgaatc 133  Q
    |||| |||||||| |||||||| |||||||||||||| |||||||    
T  13334623 tcgataaaattaagcttcaatcattctggtggttgaaggcgaatc 13334667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 20692418 - 20692217
Alignment:
Q  4 atatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaac 103  Q
    ||||| |||||||||||  ||||||| || ||||||| ||||||| |||| |||||||||||||| | |||||||||||||||||||||||||||||| |    
T  20692418 atatgactttcttgtgt--gggtgatttgaatcgaaataaacgcttgggtatttaaccaaaagaatgtcactcttgatcaattactcgacaaaattaacc 20692321  T
Q  104 ttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttaggcattcatttgta 203  Q
    ||||||||| ||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||  || || |||||||||||||||||  || ||||    
T  20692320 ttcaatcttactggtggctgaaaacgaatcgtcctaaccttgttttctcttatcatttttggtggtcaaatccattaccttgtttaggcatctatatgta 20692221  T
Q  204 atag 207  Q
    ||||    
T  20692220 atag 20692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 53459252 - 53459048
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||| | |||||  ||||| |  |  |||||||||| || |||||||    
T  53459252 ctcatatgactttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaatta 53459153  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttaggcattcattt 200  Q
    |||||||||| | ||||||| |||||||||| ||| ||| ||||  ||| || || ||||  |||||||||||||| |||| |||||| || ||| || |    
T  53459152 aacttcaatcatactggtggctgaaagcgaaccgttctacctttactttttcctaccattggtggtggttgaaccctttacattgtttgggtatttatct 53459053  T
Q  201 gtaat 205  Q
    |||||    
T  53459052 gtaat 53459048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 28432662 - 28432837
Alignment:
Q  15 ttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatctttc 114  Q
    |||||| || ||||| ||||| |||||||| |||||||||||| | ||| |  || || | | | |||||||||||||||||||||| ||| |||| | |    
T  28432662 ttgtgtgtgagtgatttggattgaaagaaatgctcgggtctttcatcaataagagacctcgcctcatcaattactcgacaaaattaagctttaatcatac 28432761  T
Q  115 tggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttag 190  Q
    |||||| |||||| ||| ||||||||||||| ||||||||| ||||| | ||||||||| |  ||||| |||||||    
T  28432762 tggtggctgaaagagaaccgtcctagctttgctttctcttaccatttgtcgtggttgaatcatttaccatgtttag 28432837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 10436773 - 10436592
Alignment:
Q  4 atatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaa-agaaggccactcttgatcaattactcgacaaaattaaa 102  Q
    |||||| | |||||||| |||||||| ||| | ||||| || |||||||| ||| |||||| ||||| |  |  || ||||||| || || ||| ||||     
T  10436773 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaag-cttcgattaatcaattgctagataaagttaag 10436675  T
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||| ||||||||| || || ||||||||    
T  10436674 cttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 10436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 20406231 - 20406303
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggtt 170  Q
    |||| |||||||||| || |||| ||||||| ||||||||||| ||||||||||| || |||| |||||||||    
T  20406231 ttaagcttcaatcttactagtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggtt 20406303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 26900397 - 26900491
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaac 174  Q
    |||||||||| || ||||||||||||||||| |  | |||  ||||||||||  |||||| ||||| ||| || |||||||| ||||||||||||    
T  26900397 atcaattactagataaaattaaacttcaatcatattagtgactgaaagcgaactgtcctacctttgctttttcctatcatttatggtggttgaac 26900491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 14854516 - 14854439
Alignment:
Q  91 gacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtgg 168  Q
    |||||||||||||||||||| |  |||||  ||||||||||||||||||  |||  |||  |||||||||| ||||||    
T  14854516 gacaaaattaaacttcaatcatattggtgtctgaaagcgaatcgtcctaatttttcttttacttatcatttgtggtgg 14854439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 15029915 - 15029987
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctc 152  Q
    ||||||| || || ||| |||| ||||||||||  ||||||||||||||||||| || ||| |||| ||||||    
T  15029915 atcaattgctagataaagttaagcttcaatcttattggtggttgaaagcgaatcatcatagttttggtttctc 15029987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 8859 - 9044
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| | | |||  ||||| |  || |||||||||| || |||||||    
T  8859 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatctaaaagaggcctcgtttcatcaattactagataaaatta 8958  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| |||||||||| ||||||||||||| ||| || || ||||| |||||||||||||| |||||||||    
T  8959 aacttcaatcatactggtggctgaaagcgaaccgtcctagctttgctttttcctaccatttgtggtggttgaaccctttaccttgt 9044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 54573083 - 54573183
Alignment:
Q  12 ttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatct 111  Q
    ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54573083 ttcttgtgtttcggtgatttggatcgaaagaaacgttcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatct 54573182  T
Q  112 t 112  Q
    |    
T  54573183 t 54573183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 40346128 - 40345943
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||| | |||||  ||||| |  |   ||||||||| || |||||||    
T  40346128 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcattcaattactagataaaatta 40346029  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| ||||||||||  ||| || ||||| ||| || || ||||| |||||||||||||  |||||||||    
T  40346028 aacttcaatcatactggtggctgaaagcgaactgtcatacctttgctttttcctaccatttgtggtggttgaaccatttaccttgt 40345943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 50771564 - 50771745
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| |||||||| ||| | ||||||||| |||| |||||| | |||||  ||| | |  |  |||||||||| || |||||||    
T  50771564 ctcatatggctttcttgtgtgtgggtgatttggctagaaagaaacactcgagtctttcatcaaaaagaggtctcgttcaatcaattactagataaaatta 50771663  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttacc 182  Q
     ||||||||| | ||||||| |||||||||| ||| ||| ||||||||| || ||  |||| | |||||||||||| |||||    
T  50771664 tacttcaatcatactggtggctgaaagcgaaccgttctacctttgttttttcgtacaatttgtagtggttgaaccctttacc 50771745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 7743434 - 7743527
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| |||||||| | |||||||||||||||||| || ||||| ||||||||||| || ||||  |||||||||||||| ||||||||||||||    
T  7743434 ttaagcttcaatcatactggtggttgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgtttagg 7743527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30598575 - 30598390
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||| ||||||||||| |||||||| ||||| ||||||||| | | ||||||| | |||||  |||   |  |  |||||||||| || |||||||    
T  30598575 ctcatatgactttcttgtgtgtgggtgatttggatagaaagaaacacacaggtctttcatcaaaaagaggtatcgttcaatcaattactggataaaatta 30598476  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| |||||||||| |  |||| ||||| ||| || || ||||| |||||||||||||  |||||||||    
T  30598475 aacttcaatcatactggtggctgaaagcgaaccaacctacctttgctttttcctaccatttgtggtggttgaaccatttaccttgt 30598390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 40850648 - 40850753
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgtt 179  Q
    ||||||| || || ||| |||| |||||||||| ||||||| ||||||| ||||||||||| |||||||| || || |||| ||||||||| || || ||    
T  40850648 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttttcctaccattcttggtggttaaatccttt 40850747  T
Q  180 accttg 185  Q
    ||||||    
T  40850748 accttg 40850753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 43499068 - 43499252
Alignment:
Q  7 tggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttc 106  Q
    ||||| |||||||| ||||||||||||   |||||||| |||||  | ||| |||||||  | ||  || || |||||||  | || ||| |||| || |    
T  43499068 tggctatcttgtgtgtgggtgatctggcgtgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagctcc 43499167  T
Q  107 aatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| | ||||||| |||||||||| || ||||| ||||||||||| || ||||  |||||||||||||| |||||||| |||||    
T  43499168 aatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttagg 43499252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 9896744 - 9896657
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    ||||||||||||| | ||||||| |||||||||| || || || ||||||||||| || ||||  |||||||||||||| ||||||||    
T  9896744 ttaaacttcaatcatactggtggctgaaagcgaaccgcccaagttttgttttctcctaccattcatggtggttgaaccctttaccttg 9896657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 47590721 - 47590631
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggtt 170  Q
    ||||||| || || ||| |||| ||||||||||  |||||| ||||||| ||||||||||| ||||||||||| || |||| |||||||||    
T  47590721 atcaattgctagataaagttaagcttcaatcttattggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggtt 47590631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 56024879 - 56024984
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgtt 179  Q
    ||||||| || || ||| |||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||| ||| || || || || ||    
T  56024879 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttgatgtttaaatccttt 56024978  T
Q  180 accttg 185  Q
    ||||||    
T  56024979 accttg 56024984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 36652070 - 36651886
Alignment:
Q  7 tggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttc 106  Q
    ||||| |||||||| |||||||||||| | |||||||| |||||  | ||| |||||||  | ||  || || |||||||  | || ||| |||| || |    
T  36652070 tggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagctcc 36651971  T
Q  107 aatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| |  |||||| |||||||||| || | ||| ||||||||||| || ||||  |||||||||||||| |||||||| |||||    
T  36651970 aatcatattggtggctgaaagcgaaccgacttagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttagg 36651886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 42718341 - 42718525
Alignment:
Q  7 tggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttc 106  Q
    ||||| |||||||| |||||||||||| | |||||||| |||||  | ||| |||||||  | ||   | || |||||||  | || ||| |||| || |    
T  42718341 tggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttattttaatcaattgttagataaagttaagctcc 42718440  T
Q  107 aatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| | ||||||| |||||||||| || ||||  ||||||||||| || ||||  |||||||||||||| |||||||| |||||    
T  42718441 aatcatactggtggctgaaagcgaaccgacctaattttgttttctcctaccattcatggtggttgaaccctttaccttgcttagg 42718525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 48640586 - 48640658
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggtt 170  Q
    |||| |||||||||| ||||||| ||||||| ||||||| ||| ||||||||||| || |||| |||||||||    
T  48640586 ttaatcttcaatcttactggtggctgaaagcaaatcgtcatagttttgttttctcctaccattcttggtggtt 48640658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 20401589 - 20401694
Alignment:
Q  82 caattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttac 181  Q
    ||||| ||||||||| |||| ||| ||||||  ||||||||||||||||||| |||||  |||  ||||||||||||||| |||||| | || |  ||||    
T  20401589 caattgctcgacaaa-ttaagctttaatcttattggtggttgaaagcgaatcatcctaattttactttctcttatcatttgtggtggcttaatctcttac 20401687  T
Q  182 cttgttt 188  Q
    |||||||    
T  20401688 cttgttt 20401694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 53584996 - 53584950
Alignment:
Q  82 caattactcgacaaaattaaacttcaatctttctggtggttgaaagc 128  Q
    ||||| || |||||||||||||||||| ||||||||||| |||||||    
T  53584996 caattgcttgacaaaattaaacttcaaactttctggtggatgaaagc 53584950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 37870890 - 37870809
Alignment:
Q  104 ttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    ||||||||| || |||| |||| || ||||||||| | ||||||||||| || ||||  ||||||||||| || ||||||||    
T  37870890 ttcaatcttactagtggctgaaggcaaatcgtcctggttttgttttctcctaccattcatggtggttgaatcctttaccttg 37870809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 54573185 - 54573254
Alignment:
Q  168 gttgaacccgttaccttgtttaggcattcatttgtaatagaagtcaagacacttggcctcttttgttttg 237  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||  |||  | ||||||||| |||||||||||    
T  54573185 gttgaacccattaccttgtttgggcatccatctgtaataggggtctcggcacttggccacttttgttttg 54573254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 16541218 - 16541034
Alignment:
Q  3 catatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaa 102  Q
    |||||||||||||||||| |||||||| |||||| ||||| ||| | | ||||||||| ||||||||||| |  |||||||||||||||| |||| |||     
T  16541218 catatggctttcttgtgtgtgggtgatttggatcaaaagagacgttggagtctttaacaaaaagaaggcctcggttgatcaattactcgataaaactaag 16541119  T
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgttt 188  Q
    |||||||| |  |||||  |||| | ||||||||||| ||||| ||||||||||||||||| ||||||||| || |||||||||||    
T  16541118 cttcaatcatattggtgactgaatgtgaatcgtcctaactttg-tttctcttatcattttttgtggttgaatcccttaccttgttt 16541034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 15759716 - 15759901
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| | |||||| ||||| ||||||||| ||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||    
T  15759716 ctcatatggctttcttgtgtgtaggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggtctcgttcaatcaattactagataaaatta 15759815  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| |||||||||| ||||||| ||||| ||| || || ||||| || ||||||||||| |||||||||    
T  15759816 aacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtgatggttgaaccctttaccttgt 15759901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 20505403 - 20505584
Alignment:
Q  4 atatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaa-agaaggccactcttgatcaattactcgacaaaattaaa 102  Q
    |||||| | |||||||| |||||||| ||| | ||||| || |||||||| ||| |||||| ||||| |  |  || ||||||| || || ||| ||||     
T  20505403 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaag-cttcgattaatcaattgctagataaagttaag 20505501  T
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||| ||||||||| || || ||||||||    
T  20505502 cttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 20505584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 26676657 - 26676838
Alignment:
Q  4 atatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaa-agaaggccactcttgatcaattactcgacaaaattaaa 102  Q
    |||||| | |||||||| |||||||| ||| | ||||| || |||||||| ||| |||||| ||||| |  |  || ||||||| || || ||| ||||     
T  26676657 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaag-cttcgattaatcaattgctagataaagttaag 26676755  T
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||| ||||||||| || || ||||||||    
T  26676756 cttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 26676838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 33676762 - 33676654
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgtt 179  Q
    ||||||| || || ||| |||| |||||||||| || |||| ||||||| ||||||||||| ||||||||||| || |||| ||||||||| || || ||    
T  33676762 atcaattgctagataaagttaagcttcaatcttactagtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaaatccttt 33676663  T
Q  180 accttgttt 188  Q
    |||||||||    
T  33676662 accttgttt 33676654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 28756726 - 28756636
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgttt 188  Q
    |||| |||||||||| ||||||| ||||||| |||| |||||| ||||||||||| || |||| ||||||||| || || |||||||||||    
T  28756726 ttaagcttcaatcttactggtggctgaaagcaaatcatcctagttttgttttctcctaccattcttggtggttaaatcctttaccttgttt 28756636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 46731903 - 46732008
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgtt 179  Q
    ||||||| || || ||| |||| |||||||||| ||||||  ||||||| ||||||||||  ||||||||||| || |||||||||||||| || || ||    
T  46731903 atcaattgctagataaagttaagcttcaatcttgctggtgactgaaagcaaatcgtcctaattttgttttctcctaccatttttggtggttaaatccttt 46732002  T
Q  180 accttg 185  Q
    ||||||    
T  46732003 accttg 46732008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 34549218 - 34549300
Alignment:
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||||||||| ||||||| |||| || ||||||||||| ||||||||||| || ||||  ||||||||||| || ||||||||    
T  34549218 cttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttaccttg 34549300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 52022621 - 52022707
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttacctt 184  Q
    |||| |||||||||| |||  ||  |||||||||| ||||||| ||||||||||| |||||||  ||||||||||| || |||||||    
T  52022621 ttaagcttcaatcttactgacggccgaaagcgaattgtcctagttttgttttctcctatcattcatggtggttgaatcctttacctt 52022707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 4532309 - 4532232
Alignment:
Q  114 ctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    ||||||| |||||||||| || ||||| ||||||||||| || ||||  |||||||||||||| | |||||| |||||    
T  4532309 ctggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaacccttcaccttgcttagg 4532232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 31911814 - 31911722
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttga 172  Q
    ||||||| || || ||| |||| |||||||||| || |||| |||||| |||||||| ||| ||||||||||| || ||||  ||||||||||    
T  31911814 atcaattgctagataaagttaagcttcaatcttactagtggctgaaagtgaatcgtcatagttttgttttctcctaccattcgtggtggttga 31911722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 33936313 - 33936376
Alignment:
Q  122 tgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    ||||||||||||||| ||| |||||||||||||| ||||  ||||||| ||| || ||||||||    
T  33936313 tgaaagcgaatcgtcatagttttgttttctcttaccattcgtggtggtcgaatcctttaccttg 33936376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 25982523 - 25982338
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||| ||| |||||||| ||||| ||||||||||| || |||||| | |||||  ||| | |  |  |||||||||| || |||||||    
T  25982523 ctcatatggctttcttctgtgtgggtgatttggatagaaagaaacgcccgtgtctttcatcaaaaagaggtctcgttccatcaattactagataaaatta 25982424  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgt 186  Q
    |||||||||| | ||||||| |||||||||| ||||| ||||||||||| || || ||||| |||||||||||||| |||||||||    
T  25982423 aacttcaatcatactggtggctgaaagcgaaccgtccaagctttgttttttcctaccatttgtggtggttgaaccctttaccttgt 25982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 40973616 - 40973443
Alignment:
Q  1 ctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaatta 100  Q
    |||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| | |||||  ||||| |  |  |||||||||| || |||||||    
T  40973616 ctcatatggctttcttgtgtgtgggttatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttccatcaattactagataaaatta 40973517  T
Q  101 aacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaac 174  Q
    |||||||||| | ||||||| |||||||||| |||||||| |||  ||| || || ||||| ||||||||||||    
T  40973516 aacttcaatcatactggtggctgaaagcgaaccgtcctagttttactttttcctaccatttgtggtggttgaac 40973443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 19021161 - 19021345
Alignment:
Q  7 tggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttc 106  Q
    ||||| |||||||| |||||||||||| | |||||||| |||||  | ||| |||||||  | ||  || || |||||||  | || ||| |||| || |    
T  19021161 tggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagctcc 19021260  T
Q  107 aatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| | ||||||| |||||||||| || ||||| ||||||||||| |  ||||  |||||||||||||| |||||||| |||||    
T  19021261 aatcatactggtggctgaaagcgaaccgacctagttttgttttctcctgccattcatggtggttgaaccctttaccttgcttagg 19021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 26369277 - 26369111
Alignment:
Q  4 atatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaa-agaaggccactcttgatcaattactcgacaaaattaaa 102  Q
    |||||| | |||||||| |||||||| ||| | ||||| || |||||||| ||| |||||| ||||| |  |  || ||||||| || || ||| ||||     
T  26369277 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaag-cttcgattaatcaattgctagataaagttaag 26369179  T
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggtt 170  Q
    |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||  ||| |||||||||    
T  26369178 cttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctactattcttggtggtt 26369111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 33696985 - 33697050
Alignment:
Q  123 gaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgttt 188  Q
    |||||||||||||||||||||| |||  | ||||||||||||||||||||| || ||| |||||||    
T  33696985 gaaagcgaatcgtcctagctttatttatttttatcatttttggtggttgaatcctttatcttgttt 33697050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 19616690 - 19616748
Alignment:
Q  146 ttttctcttatcatttttggtggttgaacccgttaccttgtttaggcattcatttgtaat 205  Q
    |||||||||||||||||| ||||||||||   ||||| ||||||||||||||| ||||||    
T  19616690 ttttctcttatcattttttgtggttgaacatattacc-tgtttaggcattcatgtgtaat 19616748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 22639438 - 22639514
Alignment:
Q  115 tggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||||| |||||| ||| || ||||| ||||||||||| || ||||  |||||||||||||  |||||||| |||||    
T  22639438 tggtggctgaaagtgaaccgacctagttttgttttctcctaccattcatggtggttgaaccatttaccttgcttagg 22639514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 6764191 - 6764369
Alignment:
Q  7 tggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttc 106  Q
    ||||| |||||||| |||||||||||| | |||||||| |||||  | ||| |||||||  | ||  || || |||||||  | || ||| |||| ||||    
T  6764191 tggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagcttc 6764290  T
Q  107 aatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    |||| | ||||||| |||||||||| || ||||| ||||||||||| || ||||  |||||||||||||| ||||||||    
T  6764291 aatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttg 6764369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 3044174 - 3044279
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgtt 179  Q
    ||||||| || || ||| |||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||| ||||||||| || || ||    
T  3044174 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatccttt 3044273  T
Q  180 accttg 185  Q
    ||||||    
T  3044274 accttg 3044279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 7901207 - 7901140
Alignment:
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggtt 170  Q
    |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||||||    
T  7901207 cttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctatcatttatggtggtt 7901140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 12410558 - 12410742
Alignment:
Q  7 tggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttc 106  Q
    ||||| |||||||| |||||||| ||| | |||||||| |||||  | ||| |||||||  | ||  || || |||||||  | || ||| |||| || |    
T  12410558 tggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagctcc 12410657  T
Q  107 aatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| | ||||||| |||||||||| || ||||| ||||||||||| || ||||  |||||||||||||| |||||||| |||||    
T  12410658 aatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttagg 12410742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 12422618 - 12422802
Alignment:
Q  7 tggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttc 106  Q
    ||||| |||||||| |||||||| ||| | |||||||| |||||  | ||| |||||||  | ||  || || |||||||  | || ||| |||| || |    
T  12422618 tggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagctcc 12422717  T
Q  107 aatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| | ||||||| |||||||||| || ||||| ||||||||||| || ||||  |||||||||||||| |||||||| |||||    
T  12422718 aatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttagg 12422802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 2380887 - 2380782
Alignment:
Q  80 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgtt 179  Q
    ||||||| || || ||| |||||||||||| || ||||||| ||||||| ||||||||||| || |||||||| || |||| |||||| || || || ||    
T  2380887 atcaattgctagataaagttaaacttcaattttactggtggctgaaagcaaatcgtcctagtttcgttttctcctaccattcttggtgtttaaatccttt 2380788  T
Q  180 accttg 185  Q
    ||||||    
T  2380787 accttg 2380782  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 37647736 - 37647920
Alignment:
Q  7 tggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttc 106  Q
    ||||| || ||||| |||||||||||| | |||||||| |||||  | ||| |||||||  | ||  || || |||||||  | || ||| |||| || |    
T  37647736 tggctatcctgtgtgtgggtgatctggcttgaaagaaatgctcgtatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagctcc 37647835  T
Q  107 aatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| | ||||||| |||||||||| || ||||| ||||||||||| || ||||  ||||||||| |||| |||||||| |||||    
T  37647836 aatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttggaccctttaccttgcttagg 37647920  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 27271517 - 27271588
Alignment:
Q  114 ctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttg 185  Q
    ||||||| ||||| |||| |||||||| ||||||||||| || | ||  |||||||||||||| ||||||||    
T  27271517 ctggtggctgaaaacgaaccgtcctagttttgttttctcctacctttcatggtggttgaaccctttaccttg 27271588  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 11031645 - 11031715
Alignment:
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaa 173  Q
    |||||||||| ||||||| |||| || ||||||||||  ||||||||||| || ||||  |||||||||||    
T  11031645 cttcaatcttactggtggctgaaggcaaatcgtcctaattttgttttctcctaccattcatggtggttgaa 11031715  T

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Target: scaffold0300 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 9439 - 9532
Alignment:
Q  98 ttaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccgttaccttgtttagg 191  Q
    |||| |||||||| | ||||||| |||||||||| || ||||| ||||||||||| || ||||  |||||||||||||| |||||||| |||||    
T  9439 ttaagcttcaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttagg 9532  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 94735 - 94805
Alignment:
Q  103 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaa 173  Q
    |||||||||| ||||||| |||| || ||||||||||| ||||||||||| || ||||  |||||||||||    
T  94735 cttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaa 94805  T

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