View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_high_16 (Length: 217)
Name: NF8177_high_16
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 49073314 - 49073501
Alignment:
| Q |
16 |
aagaatgcacgaggatgctatatatactgtgtcagaggaatgaaggattcattcactatttt--tctgttaagatcttgtggggtcacattaggtgattt |
113 |
Q |
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| T |
49073314 |
aagaatgcatgaggatgctatatatactgtgtcagaggaatgaaggattcattcactatttttttctgttaagatcttgtggggtcacattaggtgattt |
49073413 |
T |
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| Q |
114 |
ggggaaagcctgcgtgcttttggggctggtagtttactaccagtttgttactcagtttttcatactttgttattctcctgtaattgtg |
201 |
Q |
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| T |
49073414 |
gggaaaagcctgcgtgcttttggggctggtagttcactaccagtttgttactcagtttttcatactttgtcattctcctgtaattgtg |
49073501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 28510638 - 28510453
Alignment:
| Q |
16 |
aagaatgcacgaggatgctatatatactgtgtcagaggaatgaaggattcattcactattttt-ctgttaagatcttgtggggtcacattaggtgatttg |
114 |
Q |
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| T |
28510638 |
aagaatgcatgaggatgctatatatactgtgtcagaggaatgaaggattcattcactattttttctgttaagatcttgtggggtcacaataggtgatttg |
28510539 |
T |
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| Q |
115 |
gggaaagcctgcgtgcttttggggctggtagtttactaccagtttgttactcagtttttcatactttgttattctcctgtaattgtg |
201 |
Q |
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| T |
28510538 |
ggaaaagcctgtgtgcttttggggctggtagttcactaccagtttgttactca-tttttcatactttgtcattctcctgtaattgtg |
28510453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 28515607 - 28515422
Alignment:
| Q |
16 |
aagaatgcacgaggatgctatatatactgtgtcagaggaatgaaggattcattcactatttt-tctgttaagatcttgtggggtcacattaggtgatttg |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
28515607 |
aagaatgcatgaggatgctatatatactgtgtcagaggaatgaaggattcattcactattttctctgttaagatcttgtggggtcacaataggtgatttg |
28515508 |
T |
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| Q |
115 |
gggaaagcctgcgtgcttttggggctggtagtttactaccagtttgttactcagtttttcatactttgttattctcctgtaattgtg |
201 |
Q |
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|| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
28515507 |
ggaaaagcctgtgtgcttttggggctggtagttcactaccagtttgttactca-tttttcatactttgtcattctcctgtaattgtg |
28515422 |
T |
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