View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_high_2 (Length: 419)
Name: NF8177_high_2
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Original strand, 32507557 - 32507948
Alignment:
| Q |
12 |
tatactgattttcttcaaaaggtaataattatttttcctaaatagaccaaatgttgtgatactacacagtaatccgatgaacttcgcttagtttatacaa |
111 |
Q |
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| T |
32507557 |
tatattgattttcttcaaaaggtaataattatttttcctaaatagaccaaatgttgtgatactacacagtaatccaatgaacttcgcttagtttatacaa |
32507656 |
T |
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| Q |
112 |
cttatagagtatgtaatgtacaatgttaatcttatatagattatgtgatgtacaatgttaatcttaatcttataatgtcatgttggtataatataagtgt |
211 |
Q |
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| T |
32507657 |
cttatagagtatgtaatgtacaatgttaatcttgtatagagtatgtgaggtacaatgttattcttaatcttataatgtcatgttggtataatataagtgt |
32507756 |
T |
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| Q |
212 |
acaacttctagaaaataattgatattagtgtacaatttcacacatgatttttgaaaagaatggttgattgttgcacaggctcaaccagatattgcatggg |
311 |
Q |
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| T |
32507757 |
acaacttctagaaaataattgatattagtgtacaatttcacacatgatttttgaaaagaatggttgattgttgcacaggctcagccagatattgcatggg |
32507856 |
T |
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| Q |
312 |
ggaagcatacaagggttatattggacgttgggtgtggtgttggtagttttggaggttacctatttgaaagagatgttattgcaatgtctttt |
403 |
Q |
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| T |
32507857 |
ggaagcatacaagggttatacttgacgttgggtgtggtgttggtagttttggaggttacctatttgaaagagatgttattgctatgtctttt |
32507948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 8093281 - 8093166
Alignment:
| Q |
287 |
caggctcaaccagatattgcatgggggaagcatacaagggttatattggacgttgggtgtggtgttggtagttttggaggttacctatttgaaagagatg |
386 |
Q |
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| T |
8093281 |
caggctgaacctgatattgcatggggaaagcgcacaagggtgattttggatgttgggtgtggggttggaagttttggcggttacctattcgatagagatg |
8093182 |
T |
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| Q |
387 |
ttattgcaatgtcttt |
402 |
Q |
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| T |
8093181 |
ttgttgcaatgtcttt |
8093166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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