View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_high_8 (Length: 300)
Name: NF8177_high_8
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 295
Target Start/End: Original strand, 8251942 - 8252230
Alignment:
| Q |
7 |
ctgaaaagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcgga |
106 |
Q |
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| T |
8251942 |
ctgaaaagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttccttaatacaaagaataagcgga |
8252041 |
T |
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| Q |
107 |
cacttttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaataccc |
206 |
Q |
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| T |
8252042 |
cacttctccctcaccaactgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaacaccc |
8252141 |
T |
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| Q |
207 |
acaaagaccaccaccccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttattttttcttctcac |
295 |
Q |
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| T |
8252142 |
acaaagaccaccaccccgacctccctccacgccctcacttcctcaactcacttcccttgcccatcaccttatttattttttcttctcac |
8252230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 31121360 - 31121326
Alignment:
| Q |
113 |
tccctcaccaattgtctcacctccctcctcttctc |
147 |
Q |
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| T |
31121360 |
tccctcaccaattgtctcacctccctcctcttctc |
31121326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 44894110 - 44894294
Alignment:
| Q |
7 |
ctgaaaagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcgga |
106 |
Q |
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| T |
44894110 |
ctgaaaagaataaccaacatttgcatcgctccaaatagatttacataacatatcatcaaacataacacactttgtttcctgaatacatagaataaaagga |
44894209 |
T |
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| Q |
107 |
cacttttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattt |
191 |
Q |
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| T |
44894210 |
cttttctccgtcaccaactgtctcacctccctcctcttctcaaaacctcccaaaccccgaacgttccatgaaatgagcttcattt |
44894294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 44894327 - 44894399
Alignment:
| Q |
222 |
ccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttattttttcttctca |
294 |
Q |
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| T |
44894327 |
ccgacctacctccactcccacacccccttaactcacttccccttcccaacaccctctttattttttcgtctca |
44894399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 19156754 - 19156937
Alignment:
| Q |
7 |
ctgaaaagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcgga |
106 |
Q |
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|||||||||||||| |||||||| |||||||| || | | |||||| ||||||| |||| || |||| || | |||||||||||||||||||| ||| |
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| T |
19156754 |
ctgaaaagaataacaaacatttgggtcgccccaaatggtttgacacatcatatcatcaaaattaacacatttggattcctgaatacaaagaataaaagga |
19156853 |
T |
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| Q |
107 |
cacttttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcatt |
190 |
Q |
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||||| | |||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||| ||||| ||||||||| |
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| T |
19156854 |
cacttctacctcaccaattgtctcacctccctcctcttttcaaaactccccagaccccttacattccatgaaataagcttcatt |
19156937 |
T |
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