View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_high_9 (Length: 288)
Name: NF8177_high_9
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 56388312 - 56388585
Alignment:
| Q |
7 |
gaaacaaatttcctttctttcttctctgtacttcgcccaatctgttc----gttaatatggttgtattgtgtccaaacttcaaatcaaccaacacaaata |
102 |
Q |
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| T |
56388312 |
gaaacaaattccctttctttcttctctgtccctcgcccaatctgttcgttcgttaatatggttgtattgtgtccaaacttcaaatcaaacaacacaaata |
56388411 |
T |
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| Q |
103 |
tttgctccnnnnnnntaatattaatataactaatatttttgtttacaacattcaattcaaccacatttgacatttcttttcacccacttcctcttttttg |
202 |
Q |
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| T |
56388412 |
tttgctccaaaaaaataatattaatat---taata--tttgtttacaacattcaattcaaccacatttgacatttcttttcacccacttcctcttttttg |
56388506 |
T |
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| Q |
203 |
gtgggtcagtcacccacactttgaacaccttcaccatg----------cccaccgaccaccccacatgtacatattctc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
56388507 |
gtgggtcagtcacccacactttgaacaccttcaccatgcaaggatccccccaccgaccaccccacatgtacatattctc |
56388585 |
T |
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