View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_low_1 (Length: 499)
Name: NF8177_low_1
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 12096548 - 12096085
Alignment:
| Q |
18 |
cctctgccacccagacgacgaaaaagtcctcctcaagatcaaatattacttccacaatacaagcctcttctcaacctggatcccaaacacagactgttgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12096548 |
cctctgccacccagacgacgaaaaagtcctcctcaagatcaaagattacttccacaatacaagcctcttctcaacctggatcccacacacagactgttgc |
12096449 |
T |
|
| Q |
118 |
aaatggcgtatagtctcatgcaagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096448 |
aaatggcgtatagtctcatgcaagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcc |
12096349 |
T |
|
| Q |
218 |
cgcccctcatcgctgatctaccttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctca |
317 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||| ||||| |
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| T |
12096348 |
cgccactcatcgccgatctaccttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctca |
12096249 |
T |
|
| Q |
318 |
ccttaaatttgtccttcttaattggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggcttaataacaac |
417 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12096248 |
ccttaaatttgtcctccttaattggaacaacctaactggtcctatccctgattactttagcaaacttaccaatttagccaccttagggcttaataacaac |
12096149 |
T |
|
| Q |
418 |
catttaaccggtccaattcccgcttacctcggccaccttcctaaactccaaggactagacttgt |
481 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12096148 |
caattaaccggtccaattcctgcttacctcggccgccttcctaaactccaaggactagacttgt |
12096085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Complemental strand, 12079918 - 12079445
Alignment:
| Q |
8 |
cacgcccgcgcctctgccacccagacgacgaaaaagtcctcctcaagatcaaatattacttccacaatacaagcctcttctcaacctggatcccaaacac |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12079918 |
cacgcccacgcctctgccacccagacgacgaaaaagtcctcctcaagatcaaagattacttccacaatacaagcctcttctcaacctggatcccacacac |
12079819 |
T |
|
| Q |
108 |
agactgttgcaaatggcgtatagtctcatgcaagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12079818 |
agactgttgcaaatggcgtatagtctcatgcaagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtc |
12079719 |
T |
|
| Q |
208 |
ggtacaatcccgcccctcatcgctgatctaccttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgcta |
307 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| | |
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| T |
12079718 |
ggtacaataccgccactcatcgccgatctaccttacctcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaa |
12079619 |
T |
|
| Q |
308 |
gacttcctcaccttaaatttgtccttcttaattggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggct |
407 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12079618 |
gactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccctgattactttagcaaactaaccaatttagccaccttagggct |
12079519 |
T |
|
| Q |
408 |
taataacaaccatttaaccggtccaattcccgcttacctcggccaccttcctaaactccaaggactagacttgt |
481 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||||| |
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|
| T |
12079518 |
taataacaaccaattaaccggtccaattccagcttacctcggccgccttcctaaactacaaggactaaacttgt |
12079445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 461
Target Start/End: Original strand, 1248721 - 1249161
Alignment:
| Q |
21 |
ctgccacccagacgacgaaaaagtcctcctcaagatcaaatattacttccacaatacaagcctcttctcaacctggatcccaaacacagactgttgcaaa |
120 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
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|
| T |
1248721 |
ctgccaccccgacgacgaaaaagtcctcctcaaaatcaaagaccatttccacaatacaagcctcttctcaacctggactccaaaaacagattgttgcaaa |
1248820 |
T |
|
| Q |
121 |
tggcgtatagtctcatgcaagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgc |
220 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||| ||| | |||||||||||||| ||||| || || |||||||| || |||||||| ||||| | |
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|
| T |
1248821 |
tggcgcatagtcttatgcaagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccc |
1248920 |
T |
|
| Q |
221 |
ccctcatcgctgatctaccttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcacct |
320 |
Q |
| |
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| ||||| ||||| ||||| ||||| ||||||||||| |||||| ||| ||||||||||| |||||||| |||||||||||||| | |||||||||||| |
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|
| T |
1248921 |
cactcattgctgacctaccatacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcacct |
1249020 |
T |
|
| Q |
321 |
taaatttgtccttcttaattggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggcttaataacaaccat |
420 |
Q |
| |
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||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| |
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| T |
1249021 |
taactttgtcctccttaactggaacagcctaaccggtcctatccctgattactttagcaagctcaccaatttagccactttagggcttaataacaaccat |
1249120 |
T |
|
| Q |
421 |
ttaaccggtccaattcccgcttacctcggccaccttcctaa |
461 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
1249121 |
ttaaccggtcgggttccggcttacctcggccgccttcctaa |
1249161 |
T |
|
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