View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8177_low_10 (Length: 300)

Name: NF8177_low_10
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8177_low_10
NF8177_low_10
[»] chr8 (12 HSPs)
chr8 (8-234)||(9040478-9040704)
chr8 (9-233)||(25456027-25456256)
chr8 (3-234)||(3767546-3767781)
chr8 (8-197)||(25808179-25808368)
chr8 (80-177)||(25344098-25344195)
chr8 (46-201)||(16570794-16570949)
chr8 (11-223)||(37379932-37380142)
chr8 (8-175)||(32321924-32322092)
chr8 (77-201)||(9505115-9505239)
chr8 (46-198)||(7956272-7956424)
chr8 (4-56)||(20860270-20860322)
chr8 (8-54)||(25344006-25344052)
[»] scaffold0070 (3 HSPs)
scaffold0070 (9-233)||(13808-14037)
scaffold0070 (80-175)||(33834-33929)
scaffold0070 (8-72)||(33951-34015)
[»] chr3 (15 HSPs)
chr3 (1-241)||(11503207-11503458)
chr3 (118-264)||(11690129-11690271)
chr3 (8-234)||(44471078-44471309)
chr3 (9-176)||(23659508-23659677)
chr3 (39-202)||(27524115-27524276)
chr3 (8-136)||(33231404-33231532)
chr3 (8-201)||(28550542-28550735)
chr3 (29-201)||(54246531-54246704)
chr3 (29-136)||(779412-779519)
chr3 (45-201)||(26918375-26918529)
chr3 (4-131)||(46892755-46892882)
chr3 (8-189)||(44681892-44682072)
chr3 (4-201)||(26757692-26757891)
chr3 (100-234)||(30554525-30554664)
chr3 (77-165)||(22240642-22240730)
[»] chr2 (16 HSPs)
chr2 (4-234)||(5526278-5526512)
chr2 (8-228)||(29109056-29109281)
chr2 (4-201)||(38607065-38607265)
chr2 (29-193)||(30340478-30340640)
chr2 (4-176)||(37630454-37630624)
chr2 (29-124)||(3690018-3690115)
chr2 (104-201)||(3919845-3919942)
chr2 (29-176)||(27866735-27866879)
chr2 (31-203)||(44018860-44019031)
chr2 (122-241)||(12893920-12894045)
chr2 (103-199)||(4638255-4638351)
chr2 (8-88)||(22848101-22848181)
chr2 (45-129)||(33036968-33037052)
chr2 (125-196)||(13852280-13852351)
chr2 (83-176)||(36009283-36009376)
chr2 (8-72)||(28199806-28199870)
[»] chr4 (8 HSPs)
chr4 (8-198)||(8606028-8606216)
chr4 (8-241)||(53393049-53393287)
chr4 (27-196)||(8056816-8056988)
chr4 (4-199)||(24466205-24466400)
chr4 (14-136)||(19681969-19682091)
chr4 (4-129)||(42141411-42141535)
chr4 (7-199)||(23107800-23107996)
chr4 (45-124)||(39838954-39839033)
[»] chr7 (19 HSPs)
chr7 (21-282)||(46265212-46265473)
chr7 (9-197)||(2197566-2197753)
chr7 (12-177)||(35738033-35738196)
chr7 (8-196)||(25545101-25545289)
chr7 (8-234)||(31136206-31136431)
chr7 (4-201)||(48070713-48070910)
chr7 (32-202)||(44523590-44523759)
chr7 (6-201)||(3996837-3997029)
chr7 (95-176)||(12470990-12471071)
chr7 (80-201)||(12471700-12471821)
chr7 (92-199)||(7995046-7995153)
chr7 (29-141)||(32971383-32971501)
chr7 (29-202)||(12470140-12470311)
chr7 (128-282)||(2922970-2923125)
chr7 (29-129)||(27226828-27226926)
chr7 (8-63)||(2923125-2923180)
chr7 (117-176)||(21378567-21378625)
chr7 (29-159)||(19602226-19602356)
chr7 (95-176)||(45595455-45595536)
[»] chr5 (10 HSPs)
chr5 (8-197)||(1498088-1498277)
chr5 (4-201)||(7239169-7239366)
chr5 (4-201)||(7244345-7244542)
chr5 (12-201)||(17770311-17770500)
chr5 (93-201)||(41091980-41092088)
chr5 (4-123)||(31896060-31896179)
chr5 (69-176)||(39786072-39786179)
chr5 (50-196)||(16746357-16746503)
chr5 (114-176)||(29126207-29126269)
chr5 (46-138)||(19947870-19947962)
[»] chr6 (12 HSPs)
chr6 (29-239)||(11846296-11846511)
chr6 (3-201)||(7176376-7176566)
chr6 (8-201)||(9826836-9827029)
chr6 (8-202)||(26879877-26880063)
chr6 (29-177)||(11971533-11971681)
chr6 (8-202)||(7551292-7551482)
chr6 (29-128)||(23300589-23300688)
chr6 (4-138)||(1208720-1208854)
chr6 (8-201)||(2454003-2454196)
chr6 (46-132)||(32613784-32613870)
chr6 (77-124)||(20722412-20722459)
chr6 (95-197)||(26186662-26186764)
[»] scaffold0879 (1 HSPs)
scaffold0879 (4-199)||(470-665)
[»] chr1 (6 HSPs)
chr1 (8-176)||(32678351-32678518)
chr1 (8-201)||(11911684-11911878)
chr1 (92-241)||(4407748-4407902)
chr1 (46-128)||(17530776-17530858)
chr1 (8-128)||(4919575-4919693)
chr1 (110-199)||(25785852-25785941)
[»] scaffold0590 (1 HSPs)
scaffold0590 (34-134)||(8333-8433)
[»] scaffold0564 (1 HSPs)
scaffold0564 (45-120)||(6483-6558)
[»] scaffold0002 (1 HSPs)
scaffold0002 (31-129)||(344266-344364)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 9040704 - 9040478
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| |||||||||||  ||| |||||||||||||||||||| |||||||| || |||||||||||| |||||||||||||| |||    
T  9040704 gagaaagtgaatgaattaagtagtattttatcttgagctttaattttgagcctaatcataagtgtgtgtgaggagggataataatagtaaaatgggaagt 9040605  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttttaaac 207  Q
    | ||||||||||   ||||||||||||||||||  |||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||| |||    
T  9040604 ggggttagcatcaactcggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcggttttgaac 9040505  T
Q  208 tgaactagacaaggtcggatacatttt 234  Q
      | | || ||||||||||||||||||    
T  9040504 ctatcaaggcaaggtcggatacatttt 9040478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 25456027 - 25456256
Alignment:
Q  9 agaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtg 108  Q
    ||||||||||| ||||| |||||| |||| | ||||||||||||||| || || | |||||||| || || ||||||||| |||||||||||||||||||    
T  25456027 agaaagtgaatggattaagtagtactttatgctgggctttaattttgggcatactcataagtgtgtgtgaagagggataataatagtaaaatggggagtg 25456126  T
Q  109 aggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagatt-----ggttcggtttt 203  Q
    ||||||||||| ||||| ||||||||||| ||| |||||||| |||||||| || ||||||||||||||  || ||||||||||     |||||||||||    
T  25456127 aggttagcatcagttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaacaagattggtttagattgattcggttcggtttt 25456226  T
Q  204 aaactgaactagacaaggtcggatacattt 233  Q
     |||||||| ||||||||||||||||||||    
T  25456227 gaactgaaccagacaaggtcggatacattt 25456256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 3767546 - 3767781
Alignment:
Q  3 tatgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatgg 102  Q
    |||| |||||||||||| ||||| | |  |||||| ||||| |||||||||||||  |||| ||| |||| || ||| |||||||| | || ||||||||    
T  3767546 tatgggagaaagtgaatggattaaggataattttatgttggactttaattttgagtttaatcata-gtgtgtgtgagaagggataatattactaaaatgg 3767644  T
Q  103 ggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggtt-----c 197  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||| | |||||| ||||||||||||||||   |||||||||||||||||     |    
T  3767645 ggagtgaggttagcatcggttcggttcatcggttcattggatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagattggttcggttc 3767744  T
Q  198 ggttttaaactgaactagacaaggtcggatacatttt 234  Q
    |||||| ||| |||||| |||||||||||||| ||||    
T  3767745 ggttttgaaccgaactaaacaaggtcggatacttttt 3767781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 25808179 - 25808368
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    |||||||||||| ||||| |||||| |||| |   ||||||||||||  || || | |||||||| || || ||||||||| |||| ||||||| |||||    
T  25808179 gagaaagtgaatggattaagtagtactttatgcacggctttaattttaggcatactcataagtgtgtgtgaagagggataataatattaaaatgaggagt 25808278  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttc 197  Q
    |||||||||||||||||| ||||||| ||||||| |||||||| |||||||| ||||| ||||||||| |  ||||||||||||||||||    
T  25808279 gaggttagcatcggttcgattcatcgatttcttggatctcaaaatgaaaaaccgagaatcaaaccaaaaaagatcggtttagattggttc 25808368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 25344098 - 25344195
Alignment:
Q  80 gagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaaca 177  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  25344098 gagggataatagtagtaaaatgaggagtgaggttagcatcggttagattcatctgtttcttgaatctcaaaatgaaaaactgagaaccaaatcaaaca 25344195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 201
Target Start/End: Original strand, 16570794 - 16570949
Alignment:
Q  46 tttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatc 145  Q
    ||||||||||||  |||| |||| ||| || |||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||  ||| |||    
T  16570794 tttaattttgagtttaatcataaatgtgtgtgaggagggataataatactaaaatggggagtgaagttagcatcggttcagttcatcggttctttggatc 16570893  T
Q  146 tcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    ||||| | |||||  ||||||| |||||||    |||||||||| |||||| ||||    
T  16570894 tcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggtt 16570949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 37379932 - 37380142
Alignment:
Q  11 aaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgag 110  Q
    ||||||||| ||||| | || |||||| ||| ||||||||||||||| ||||  |||||   ||| |||||| ||||| | ||||||||||| ||||| |    
T  37379932 aaagtgaatggattaagaagcattttatgttaggctttaattttgagtctaaccataaga--atgtgaggagtgataatattagtaaaatggagagtggg 37380029  T
Q  111 gttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttttaaactga 210  Q
    |||| ||| ||||||||||| | |||  ||  |||||||| |||||||||||||||| ||  ||| |   || ||||||||||||||||| |||||| ||    
T  37380030 gttaccattggttcggttcacccgttcgttagatctcaaaatgaaaaactgagaaccgaaataaataatgtcagtttagattggttcggtgttaaaccga 37380129  T
Q  211 actagacaaggtc 223  Q
    || ||||| ||||    
T  37380130 accagacatggtc 37380142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 32322092 - 32321924
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcct-aattataagtgtatgcgaggagggataacaatagtaaaatggggag 106  Q
    |||||||| |||  |||| | ||||||||| ||||| ||||||| |||||  | ||| |||||||| || |||||| ||||| | || |||||||| |||    
T  32322092 gagaaagtaaatgaattaaggagtattttatgttggactttaatcttgagttttaatcataagtgtgtgtgaggagagataatattactaaaatggagag 32321993  T
Q  107 tgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaa 175  Q
    |||||||||||| |||| |||| |||||||  |||||||| ||| | |||||| ||||||| |||||||    
T  32321992 tgaggttagcattggtttggtttatcggttcattgaatcttaaaattaaaaaccgagaaccgaaccaaa 32321924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 9505239 - 9505115
Alignment:
Q  77 gaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    ||||| |||||| | || ||||||||||||||||||| |||||||||||||| |||||||| ||| || ||||| | |||| |  |||||| ||||||||    
T  9505239 gaggaaggataatattactaaaatggggagtgaggttggcatcggttcggtttatcggtttgttggatttcaaaattaaaatcctagaaccgaaccaaac 9505140  T
Q  177 acaatcggtttagattggttcggtt 201  Q
       |||||||| | |||||||||||    
T  9505139 tatatcggttttggttggttcggtt 9505115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 7956272 - 7956424
Alignment:
Q  46 tttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatc 145  Q
    |||||||||| || |||  |||||| | || ||||  |||||| | |||||||||  |||||  ||||| |||||| | ||||||||||||||    |||    
T  7956272 tttaattttgggcataaccataagtttgtgtgaggtaggataatattagtaaaataaggagtatggttatcatcggattggttcatcggtttcacatatc 7956371  T
Q  146 tcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcg 198  Q
    ||||| ||||||||   ||||||||||||||   |||||||| ||||||||||    
T  7956372 tcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcg 7956424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 20860270 - 20860322
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttga 56  Q
    |||||||||||||||||||||| | ||||||||| ||| | ||||||||||||    
T  20860270 atgagagaaagtgaatagattaaggagtattttatgttcgactttaattttga 20860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 25344006 - 25344052
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaatttt 54  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||||    
T  25344006 gagaaagtgaatggattaagtagtactttatgttgggctttaatttt 25344052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 14037 - 13808
Alignment:
Q  9 agaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtg 108  Q
    ||||||||||| ||||| |||||| |||| | ||||||||||||||| || || | |||||||| || || |||| |||| |||||||||||||||||||    
T  14037 agaaagtgaatggattaagtagtactttatgctgggctttaattttgggcatactcataagtgtgtgtgaagaggtataataatagtaaaatggggagtg 13938  T
Q  109 aggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt-----tt 203  Q
    ||||||||||||||||| ||||||||||| ||| |||||||| |||||||| || |||||||||||| |  ||| ||||||||||||||||||     ||    
T  13937 aggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaataagatcagtttagattggttcggttcgatttt 13838  T
Q  204 aaactgaactagacaaggtcggatacattt 233  Q
     |||||||| ||||||||||| ||||||||    
T  13837 gaactgaaccagacaaggtcgaatacattt 13808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 33929 - 33834
Alignment:
Q  80 gagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaa 175  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  33929 gagggataataatagtaaaatggggagtgaggttaccatcagttagattcatctgtttcttgaatctcaaaatgaaaaactgagaaccaaaccaaa 33834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 34015 - 33951
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgt 72  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||||| || || | ||||||||    
T  34015 gagaaagtgaatggattaagtagtactttatgttgggctttaattttgggcatactcataagtgt 33951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11503207 - 11503458
Alignment:
Q  1 agtatgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcg------aggagggataacaatag 94  Q
    |||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||  | |||| |||||||| || |      ||||||||||| |||||    
T  11503207 agtatgagaggaagtgaatggattatgtagtattttatgttgggctttaattttggacataatcataagtgtgtgtgtgtgtgaggagggataataatag 11503306  T
Q  95 taaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattgg 194  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||  ||||||||||||||| |  |||||||| ||||||    
T  11503307 taaaatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattgg 11503406  T
Q  195 tt-----cggttttaaactgaactagacaaggtcggatacatttttgatttg 241  Q
    ||     ||||||| |||   || ||||||||||||||||||||||| ||||    
T  11503407 ttcggttcggttttgaaccttaccagacaaggtcggatacatttttggtttg 11503458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 11690129 - 11690271
Alignment:
Q  118 tcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttttaaactgaactagac 217  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||||||  ||||    
T  11690129 tcggttcggttcatcggtttctttaatctcaaagtgaaaaaccgagagccaaaccaaacacaatcggtttagattggttcaattttaaactgaatcagac 11690228  T
Q  218 aaggtcggatacatttttgatttgttggttcgatttagaattttggt 264  Q
    ||||||| ||| | ||| |||   |||||||||||||||||||||||    
T  11690229 aaggtcgaataga-tttcgat---ttggttcgatttagaattttggt 11690271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 44471309 - 44471078
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | ||||||||| ||| | |||||||||||||| |||| |||||||| |  |||||||||||| | || |||| ||||||||    
T  44471309 gagaaagtgaatgaattatggagtattttatgttagcctttaattttgagcttaatcataagtgtgtttgaggagggataatattactaaactggggagt 44471210  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagatt-----ggttcggttt 202  Q
     | ||||||||||||||||||||||||||  ||| || ||||| | ||||||  |||||| ||||||||   |||||||||||||     ||||||||||    
T  44471209 tatgttagcatcggttcggttcatcggttctttggatttcaaaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttt 44471110  T
Q  203 taaactgaactagacaaggtcggatacatttt 234  Q
    | ||| |||||| |||||||||||||||||||    
T  44471109 tgaaccgaactaaacaaggtcggatacatttt 44471078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 23659677 - 23659508
Alignment:
Q  9 agaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcg--aggagggataacaatagtaaaatggggag 106  Q
    |||||||||||  |||| | ||||||||| ||||| |||||||||||||| ||||||||||||| || |  ||||||||||| | || |||||||| |||    
T  23659677 agaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaattataagtgtgtgtgtgaggagggataatattactaaaatggagag 23659578  T
Q  107 tgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    ||| |||||||||||||||||||| |||||  ||| |||||||| | ||||||  |||||| || |||||    
T  23659577 tgatgttagcatcggttcggttcaccggttcattggatctcaaaattaaaaaccaagaaccgaatcaaac 23659508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 27524276 - 27524115
Alignment:
Q  39 gttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttc 138  Q
    |||||| ||||| |||| ||||||| |||||||| ||  ||||| ||||| ||||||||||||||||||| ||||| ||| |||||||||||||| || |    
T  27524276 gttggggtttaactttgggcctaatcataagtgtgtg--aggagagataataatagtaaaatggggagtggggttaccattggttcggttcatcgattcc 27524179  T
Q  139 ttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttt 202  Q
    ||| |||| ||| | |||||| ||||||| |||||||||   ||| |||||||||||| |||||    
T  27524178 ttggatctgaaaattaaaaacagagaaccgaaccaaacaaggtcgatttagattggtttggttt 27524115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 33231404 - 33231532
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||  | ||||||||| | ||  |||||||||||||| |||| ||||||||||  ||||||| |||| | || |||||||||||||    
T  33231404 gagaaagtgaatgaattgtggagtattttatgctgacctttaattttgagcttaatcataagtgtatatgaggaggtataatattactaaaatggggagt 33231503  T
Q  108 gaggttagcatcggttcggttcatcggtt 136  Q
    |||||||||||||||||||||||||||||    
T  33231504 gaggttagcatcggttcggttcatcggtt 33231532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 28550735 - 28550542
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||  | ||||||||||||||| |||||||||||||  |||| |||||||| || |||||| ||||| | |   ||||| ||||||    
T  28550735 gagaaagtgaatgaattgagaagtattttacgttggactttaattttgagtttaatcataagtgtgtgtgaggagagataatattgccaaaatagggagt 28550636  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    ||||||| ||||| |||||||||||||||  ||  |||||||| | |||||| ||||| | ||||||||   ||| |||||  |||||||||||    
T  28550635 gaggttaacatcgattcggttcatcggttctttagatctcaaaattaaaaaccgagaatcgaaccaaactagatccgtttaagttggttcggtt 28550542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 54246704 - 54246531
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtat-gcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggt 127  Q
    ||||||||| ||||| |||||||||||||| |||  |||  ||| | | |||||| ||| | | || ||||||||||||||| ||||||||||||| |||    
T  54246704 agtattttatgttggactttaattttgagcttaagcatagatgttttgtgaggagcgatgatattaataaaatggggagtgaagttagcatcggtttggt 54246605  T
Q  128 tcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    || ||||||  ||| |||||||| | ||||| |||||||| |||||||||  |||||||| | |||||||||||    
T  54246604 tcgtcggttctttggatctcaaaattaaaaattgagaaccgaaccaaacattatcggtttgggttggttcggtt 54246531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 779412 - 779519
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    ||||||||| ||||| |||||||||||||  |||| ||||||||||| |||||| ||||  | ||  ||||||| ||||||| |||||||||||||||||    
T  779412 agtattttatgttggcctttaattttgagtttaatcataagtgtatgtgaggagtgatagtattacaaaaatggagagtgagattagcatcggttcggtt 779511  T
Q  129 catcggtt 136  Q
    ||||||||    
T  779512 catcggtt 779519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 26918375 - 26918529
Alignment:
Q  45 ctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaat 144  Q
    |||||||||||||| ||||||||||||| ||  ||||||||||| | || |||||| ||||||  |||||||||| ||||| |||||||| |  ||||||    
T  26918375 ctttaattttgagcttaattataagtgtgtg--aggagggataatattactaaaatagggagtagggttagcatcagttcgattcatcggctctttgaat 26918472  T
Q  145 ctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    |||||| | ||||| |||||||  ||||||||   |||  ||||| |||||||||||    
T  26918473 ctcaaaattaaaaattgagaactgaaccaaactagatcaatttaggttggttcggtt 26918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 46892882 - 46892755
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    ||||||||||||||||  |||| | ||||||||| ||||  |||||||||||||   |||  ||||||| || || ||||||||| | || ||||||| |    
T  46892882 atgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagatcaatcgtaagtgtgtgtgatgagggataatattactaaaatgag 46892783  T
Q  104 gagtgaggttagcatcggttcggttcat 131  Q
    |||||||||||||||||||| |||||||    
T  46892782 gagtgaggttagcatcggtttggttcat 46892755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 44681892 - 44682072
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    |||||||| |||  |||| | ||||||||| ||||| |||||||||||||| |||| |||||||| || ||| | |||||| | || | || |||| |||    
T  44681892 gagaaagtaaatgaattaaggagtattttatgttggactttaattttgagcttaatcataagtgtgtgtgagaacggataatattactcaa-tgggaagt 44681990  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttag 189  Q
    |||||||||||||||||||||  ||||||  | | || ||||| | ||||||  |||||||||||||||   ||||||||||    
T  44681991 gaggttagcatcggttcggtttgtcggttcatcggatttcaaaattaaaaaccaagaaccaaaccaaactagatcggtttag 44682072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 26757891 - 26757692
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataa--gtgtatgcgaggagggataacaatagtaaaatg 101  Q
    ||||||||||||||||  |||| | ||||||||| ||||  |||||||||||||| |||| ||||  |||| || | ||| |||||| | || |||||||    
T  26757891 atgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtgtgtggaaggataatattactaaaatg 26757792  T
Q  102 gggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    | |||||||||||  |||||||| ||| |||| ||  ||| |||||||| | |||| |  |||||| |||||| |   |||| ||||| |||||||||||    
T  26757791 gagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 26757692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 30554525 - 30554664
Alignment:
Q  100 tggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcgg 199  Q
    |||| ||||||| | ||||||||||| |||||| |||  ||| || ||||| | |||||  ||||||| ||||||||   ||||||||||||||||||||    
T  30554525 tgggaagtgaggatggcatcggttcgattcatcagttctttggatatcaaaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcgg 30554624  T
Q  200 tt-----ttaaactgaactagacaaggtcggatacatttt 234  Q
    ||     || ||| |||||| |||||||||||||| ||||    
T  30554625 ttcgattttgaaccgaactaaacaaggtcggatacttttt 30554664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 22240730 - 22240642
Alignment:
Q  77 gaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaa 165  Q
    |||||||||||  | ||| ||||| | ||||||| ||| |||||||| |||| ||||||| |||| |||||||| || ||||| |||||    
T  22240730 gaggagggatagtattagaaaaatagagagtgagattatcatcggtttggtttatcggttccttggatctcaaaatgtaaaaccgagaa 22240642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 5526512 - 5526278
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    |||| |||||||||||  |||| | ||||||||| ||||| |||||||||||||  |||| |||||||| ||  ||||||||||| |||| |||||||||    
T  5526512 atgacagaaagtgaatgaattaaggagtattttatgttggactttaattttgagtttaatcataagtgtgtgtaaggagggataataatactaaaatggg 5526413  T
Q  104 gagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcg----g 199  Q
    ||||||| ||||||||||||||||||||| |||  ||| |||||||| | |||||||||||||| ||||||||   |||||||||| ||||||||    |    
T  5526412 gagtgagattagcatcggttcggttcatctgttctttggatctcaaaattaaaaactgagaaccgaaccaaactagatcggtttaggttggttcgttcag 5526313  T
Q  200 ttttaaactgaactagacaaggtcggatacatttt 234  Q
    |||| ||| |||| | |||||||||||||| ||||    
T  5526312 ttttgaaccgaacaaaacaaggtcggatacgtttt 5526278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 29109056 - 29109281
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | ||||||||| ||||| |||||||||||||| ||||||||| ||| || |||| ||||||| | || ||||||||| ||     
T  29109056 gagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaattataattgtgtgtgaggggggataatattactaaaatgggaagg 29109155  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagatt-----ggttcggttt 202  Q
     |||||||||||| || ||||||||||||  ||| |||||||| | |||||| ||||||||||||||||   || ||||||| ||     ||||||||||    
T  29109156 aaggttagcatcgatttggttcatcggttctttggatctcaaaattaaaaaccgagaaccaaaccaaactagattggtttaggttgcttcggttcggttt 29109255  T
Q  203 taaactgaactagacaaggtcggata 228  Q
    | |||||||| | |||||||||||||    
T  29109256 tgaactgaaccaaacaaggtcggata 29109281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 38607265 - 38607065
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcg----aggagggataacaatagtaaaa 99  Q
    |||||| ||| ||||| |||||  |||||||||| ||||| ||| ||||||| ||||||| |||||||| ||||    ||||||||||||| ||||||||    
T  38607265 atgagataaaatgaatggattaaatagtattttatgttggactt-aattttgggcctaatcataagtgtttgcgtgtgaggagggataacattagtaaaa 38607167  T
Q  100 tggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcgg 199  Q
    ||| ||||| ||||||||||   |||||||||||||||  || |||||||| ||||||||  |||||| |||||||||   || ||||||||||||||||    
T  38607166 tggcgagtgtggttagcatcaaatcggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcgg 38607067  T
Q  200 tt 201  Q
    ||    
T  38607066 tt 38607065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 30340640 - 30340478
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    ||||||||| ||||  ||||||||||  | ||||| |||||||| ||  ||||||||||| | ||||||||| |||||||  |||| | | ||||| |||    
T  30340640 agtattttatgttgaactttaattttaggtctaatcataagtgtgtg--aggagggataatattagtaaaatagggagtggagttaccgttggttcagtt 30340543  T
Q  129 catcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattg 193  Q
    ||||| |||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||||||    
T  30340542 catcgatttcttgaatctcaaaatgaaaaactgagaatcaaaccaaacaagatcggcttagattg 30340478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 37630624 - 37630454
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    ||||||||||||||||  |||| | ||||||| | ||||| |||||||||||||| |||| |||||||| ||  ||||||||||| | || |||| ||||    
T  37630624 atgagagaaagtgaatgaattaagaagtatttgatgttggactttaattttgagcttaatcataagtgtgtg--aggagggataatattactaaagtggg 37630527  T
Q  104 gagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    |||||| |||||||||  ||||||||| |||||  ||| |||||||| | |||||| ||||||  ||||||||    
T  37630526 gagtgatgttagcatccattcggttcaccggttcattggatctcaaaattaaaaaccgagaactgaaccaaac 37630454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 3690018 - 3690115
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatg--cgaggagggataacaatagtaaaatggggagtgaggttagcatcggttc 124  Q
    ||||||||||||||| |||||||||||||| |||| |||||||| ||  ||||||||||||| | || ||||||||||||| ||||||||||||||||    
T  3690018 agtattttacgttggactttaattttgagcttaatcataagtgtgtgtgcgaggagggataatattactaaaatggggagtaaggttagcatcggttc 3690115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 3919845 - 3919942
Alignment:
Q  104 gagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    |||||| ||||||||||||||||||||||||||  ||  |||||||| | ||||| | |||||||||||||||   |||||||||| |||||||||||    
T  3919845 gagtgaagttagcatcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggtt 3919942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 27866879 - 27866735
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    ||||||||| ||||| |||||||||||||  |||| |||||||  || |||||| ||||| | || |||||||| |||||||| || ||||||||| |||    
T  27866879 agtattttatgttggactttaattttgagattaatcataagtg--tgtgaggagtgataatattactaaaatggtgagtgagg-taacatcggttcagtt 27866783  T
Q  129 catcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    ||||||||  | | |||||||| | |||||| ||||| | ||||||||    
T  27866782 catcggttcttgggatctcaaaattaaaaaccgagaatcgaaccaaac 27866735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 44018860 - 44019031
Alignment:
Q  31 tattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttca 130  Q
    ||||||| ||||| |||||||||||| | || | |||||||| ||| |||| | |||| | |  |||||| | || | |||||||||  |||||||||||    
T  44018860 tattttatgttggactttaattttgaacttattcataagtgtgtgcaaggaagaataatattgttaaaattgagaataaggttagcag-ggttcggttca 44018958  T
Q  131 tcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtttt 203  Q
    || |||| ||| |||||||| | |||| | ||||||| ||||||||  ||||||||||  |||||||||||||    
T  44018959 tcagttttttggatctcaaaattaaaatccgagaaccgaaccaaactaaatcggtttaagttggttcggtttt 44019031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 12893920 - 12894045
Alignment:
Q  122 ttcggttcatcggtttcttgaatctcaaag-tgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtttta-----aactgaactag 215  Q
    |||||||||||||||||||  ||||||||  | |||||||||||||  ||||||| |   |||||||||||||||||||||||      ||| |||| |     
T  12893920 ttcggttcatcggtttcttttatctcaaaaattaaaaactgagaactgaaccaaagaagttcggtttagattggttcggttttgttttgaaccgaaccaa 12894019  T
Q  216 acaaggtcggatacatttttgatttg 241  Q
    ||||||||||||||||||||| ||||    
T  12894020 acaaggtcggatacatttttggtttg 12894045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 4638351 - 4638255
Alignment:
Q  103 ggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcgg 199  Q
    |||||| ||||| |||||| | ||||||||||||||  | |||||||| ||||||||   ||||||||||||||  |||| || | |||||||||||    
T  4638351 ggagtgtggttatcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcgg 4638255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 22848101 - 22848181
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataa 88  Q
    ||||||||||||  || | | ||||||||| ||||| |||||| ||||||| |||| |||||||| || ||||||||||||    
T  22848101 gagaaagtgaatgaataatggagtattttatgttggcctttaactttgagcttaatcataagtgtgtgtgaggagggataa 22848181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 33036968 - 33037052
Alignment:
Q  45 ctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttc 129  Q
    |||||||||||||| |||| |||  ||| || |||||||||||| | || |||||||| |||||| |||||||||| ||| ||||    
T  33036968 ctttaattttgagcttaatcatagatgtgtgtgaggagggataatattactaaaatggagagtgaagttagcatcgattcagttc 33037052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 13852280 - 13852351
Alignment:
Q  125 ggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggtt 196  Q
    ||||||||||||||  | |||||||| |||||||||  ||||||||||||||   |||||||| ||||||||    
T  13852280 ggttcatcggtttcacggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtt 13852351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 36009376 - 36009283
Alignment:
Q  83 ggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    |||||| | |||||||||  |||||| ||||| |||||| | | |||||||||||| || ||||| || ||||||||   ||||||||||||||    
T  36009376 ggataatattagtaaaataaggagtgtggttatcatcggattgattcatcggtttcatggatctcgaaatgaaaaaccatgaaccaaaccaaac 36009283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 28199870 - 28199806
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgt 72  Q
    |||||||||||| ||||| | |||||| || ||||| ||||||||||  ||||||| ||||||||    
T  28199870 gagaaagtgaatggattaaggagtattatatgttggactttaattttaggcctaatcataagtgt 28199806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 8606028 - 8606216
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | ||||||||| ||||| ||||||||||| ||||||| |||||||||||  |||||  || | | ||||||||||||||||    
T  8606028 gagaaagtgaatgaattaaggagtattttatgttggactttaattttgggcctaataataagtgtatg--aggagaaattatattagtaaaatggggagt 8606125  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcg 198  Q
    | ||||| |||||||||| ||||| |||| |||| |||||||| |||||||||||||||| |||||| ||  |||||||||||||||||||    
T  8606126 gtggttaccatcggttcgattcattggttccttggatctcaaaatgaaaaactgagaaccgaaccaaccaagatcggtttagattggttcg 8606216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 53393049 - 53393287
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | || |||||| ||||  |||||||||||||| |||| | |||||| || || ||||||||| | || ||||||||  |||    
T  53393049 gagaaagtgaatgaattatggagcattttatgttgacctttaattttgagcttaatcagaagtgtgtgtgaagagggataatattactaaaatggaaagt 53393148  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcg-----gttt 202  Q
    |||||||||||||||||||||||||||||  ||| || ||||||| | |||| ||||||| ||||||||   |||||||||| ||||||||     ||||    
T  53393149 gaggttagcatcggttcggttcatcggttcattggatttcaaagttataaaccgagaaccgaaccaaactagatcggtttaggttggttcggttcagttt 53393248  T
Q  203 taaactgaactagacaaggtcggatacatttttgatttg 241  Q
    ||||| |||| | |||||||||||||| |||||| ||||    
T  53393249 taaaccgaaccaaacaaggtcggatacttttttggtttg 53393287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 8056988 - 8056816
Alignment:
Q  27 gtagtattttacgttgggctttaattttgagcctaattataagtgtatgcg----aggagggataacaatagtaaaatggggagtgaggttagcatcggt 122  Q
    ||||||||||||||| | ||||||||||| | ||  | |||||||| || |    |||| |||||| | ||||||||||||||||| |||||| ||||||    
T  8056988 gtagtattttacgttagactttaattttgggtctgttcataagtgtgtgtgtgtgaggaaggataatattagtaaaatggggagtggggttaggatcggt 8056889  T
Q  123 tcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggtt 196  Q
    || |||||||||||||||| |||||||| |||||| | ||||||| |||||||||   ||||||||||||||||    
T  8056888 tcagttcatcggtttcttggatctcaaaatgaaaatc-gagaaccgaaccaaacaagttcggtttagattggtt 8056816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 24466205 - 24466400
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    |||||||||||||||| |||||   ||||||||| ||||| ||||||||||||||||||  |||||| | || ||||  |||||| | |||||||||  |    
T  24466205 atgagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaataag 24466304  T
Q  104 gagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcgg 199  Q
    ||||| ||||| |||||| | ||||||||||||||  | |||||||| ||||||||   |||||||| |||||   ||||||||  ||||||||||    
T  24466305 gagtgtggttatcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcgg 24466400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 19681969 - 19682091
Alignment:
Q  14 gtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggtt 113  Q
    ||||||| |||| | ||||||||| ||| | |||||||||||||| ||||  |||||||||| ||| |||||||| | || ||||||| | |||||||||    
T  19681969 gtgaataaattaaggagtattttatgtttgactttaattttgagcttaatcgtaagtgtatgtgagaagggataatattactaaaatgagaagtgaggtt 19682068  T
Q  114 agcatcggttcggttcatcggtt 136  Q
    |||||||||| ||||||||||||    
T  19682069 agcatcggtttggttcatcggtt 19682091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 42141535 - 42141411
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    ||||||||||||||||  |||| | ||||||||| ||||| |||||||||||||  |||| |||||||| || ||||||| |||| | || ||||||| |    
T  42141535 atgagagaaagtgaatc-attaaggagtattttatgttggactttaattttgagattaatcataagtgtgtgtgaggaggtataatattactaaaatgag 42141437  T
Q  104 gagtgaggttagcatcggttcggttc 129  Q
    ||||||| ||||||||||||||||||    
T  42141436 gagtgagtttagcatcggttcggttc 42141411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 23107800 - 23107996
Alignment:
Q  7 agagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggag 106  Q
    ||||||||||||| |||||   ||||||||| ||||| ||||||||||||||||||  |||||| | || ||||  |||||| | |||||||||  ||||    
T  23107800 agagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggag 23107899  T
Q  107 tgaggttagcatcg----gttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcgg 199  Q
    |  ||||| |||||    | | ||||||||||||||  | ||||| || ||||||||   ||| ||||||||||   |||||||| |||||||||||    
T  23107900 tatggttatcatcggattgattggttcatcggtttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcgg 23107996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 39838954 - 39839033
Alignment:
Q  45 ctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttc 124  Q
    ||||||| |||||| |||| |||||||| || |||||| ||||| | || ||||  | ||||||||||||||||||||||    
T  39838954 ctttaatattgagcttaatcataagtgtgtgtgaggagagataatattactaaatcgaggagtgaggttagcatcggttc 39839033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 46265212 - 46265473
Alignment:
Q  21 gattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcg 120  Q
    ||||| ||||||||||| ||  ||| ||||||||| || |||| |||||||| ||  |||| ||| || |||||||||||| ||||||  |||| ||| |    
T  46265212 gattaagtagtattttatgtatggcattaattttgggcataatcataagtgtgtg--aggaaggacaataatagtaaaatgaggagtggagttaacattg 46265309  T
Q  121 gttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagatt-----ggttcggttttaaactgaactag 215  Q
     || ||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||  |||||||||||||     ||||||||||| ||| ||||  |    
T  46265310 atttggttcatcggtttcttggatctcaaaatgacaaactgaaaaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccg 46265409  T
Q  216 acaaggtcggatacatttttgatttgttggttcgatttagaattttggttttgtccaaaccgcttac 282  Q
    ||||||||||||||||||||| |   |||||||| ||| || ||| ||||||||||||| |||||||    
T  46265410 acaaggtcggatacatttttggt---ttggttcggtttggactttcggttttgtccaaatcgcttac 46265473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 2197566 - 2197753
Alignment:
Q  9 agaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtg 108  Q
    |||||||||| | |||| ||||||||||| |||||||| |||||| || |||||  | |||||| |||||||| |||||| | |||||||||||||||||    
T  2197566 agaaagtgaacatattaagtagtattttatgttgggctctaatttcga-cctaagcacaagtgtgtgcgaggaaggataatattagtaaaatggggagtg 2197664  T
Q  109 aggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttc 197  Q
    | ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||| || ||||||   ||| |||||||||||||    
T  2197665 aagttagcatcggtttggttgatcggtttcttggatctcaaaatgaaaaaccgagaacccaatcaaacaaggtcgatttagattggttc 2197753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 35738033 - 35738196
Alignment:
Q  12 aagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgagg 111  Q
    |||||||| ||||| | ||||||||| |||||  |||||||||| ||||||| |||||||| ||  | ||||||||| | ||||||||||||||||| ||    
T  35738033 aagtgaatggattaaggagtattttatgttggaatttaattttgggcctaatcataagtgtgtg--atgagggataatattagtaaaatggggagtgggg 35738130  T
Q  112 ttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaaca 177  Q
    |||  ||| ||| |||| ||||||| |||| |||||||| |||||||||||||||| |||||||||    
T  35738131 ttacaatcagtttggttgatcggttccttggatctcaaaatgaaaaactgagaaccgaaccaaaca 35738196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 25545101 - 25545289
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | ||||||||| ||||  |||||||||||||| |||| ||||||||||| ||||  |||||| | || |||||||||||||    
T  25545101 gagaaagtgaatgaattatggagtattttatgttgacctttaattttgagcttaatcataagtgtatgtgaggcaggataatattactaaaatggggagt 25545200  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggtt 196  Q
    ||||||||||| |||||| ||||| ||||  ||| || | ||| | ||||  |||||||||||||||||   |||||||||| ||||||    
T  25545201 gaggttagcattggttcgattcattggttctttggattttaaaattaaaagttgagaaccaaaccaaactagatcggtttaggttggtt 25545289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 31136431 - 31136206
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | ||||||||| ||||| |||||||||||||| ||||||| | ||| ||||||| ||||||| | || || ||||  ||||    
T  31136431 gagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaattatgaatgtgtgcgagg-gggataatattactataatgatgagt 31136333  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttttaaac 207  Q
    ||| |||||||||||||||||||||||||  ||| ||||| || |   ||||  ||||||||||||||    || ||||||| ||||||||||||| |||    
T  31136332 gagtttagcatcggttcggttcatcggttctttggatctcgaaatttgaaaccaagaaccaaaccaaattatattggtttaggttggttcggttttgaac 31136233  T
Q  208 tgaactagacaaggtcggatacatttt 234  Q
     |||  | |||||||||||||| ||||    
T  31136232 cgaatcaaacaaggtcggatacttttt 31136206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 48070910 - 48070713
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    |||| |||||||||||  |||| | ||||||||| ||||| |||||||||||||  |||| |||||||| || || ||||||||  | || | ||||||     
T  48070910 atgaaagaaagtgaatgaattaagaagtattttatgttggactttaattttgagattaatcataagtgtgtgtgaagagggatattattactgaaatggt 48070811  T
Q  104 gagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    ||||||||||| ||||||||| ||| |||||||  ||| |||||||| | |||||| ||||||| || |||||   |||||||||| || ||||||||    
T  48070810 gagtgaggttaacatcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggtt 48070713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 44523590 - 44523759
Alignment:
Q  32 attttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcat 131  Q
    |||||| ||||| |||||||||||||| |||| |||||||| || |||||| ||||| | || |||||||| |||||||||||  |||| ||| ||| ||    
T  44523590 attttatgttggactttaattttgagcataatcataagtgtgtgtgaggagcgataatattactaaaatggagagtgaggttaatatcgattcagtttat 44523689  T
Q  132 cggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttt 202  Q
    | |||||||   ||||||| | |||||  ||||||| |||||||    || ||||||| ||||||||||||    
T  44523690 c-gtttctttggtctcaaaattaaaaatcgagaaccgaaccaaattatattggtttaggttggttcggttt 44523759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 3996837 - 3997029
Alignment:
Q  6 gagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatgggga 105  Q
    ||||||||||||||   ||| | ||||||||| | | | ||||||||||| || |||| |||||||| ||  ||||| | ||  | ||||||||| ||||    
T  3996837 gagagaaagtgaatgacttaagaagtattttatgcttgactttaattttgggcataatcataagtgtgtg--aggagagttattattagtaaaattggga 3996934  T
Q  106 gtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    |||  |||| || ||||||||||||| |||| |||| |||||||| || ||||| ||||||| |||||||||   | |||||||||||||| ||||    
T  3996935 gtggagttaccaacggttcggttcataggttccttggatctcaaaatg-aaaaccgagaaccgaaccaaacaaggttggtttagattggttaggtt 3997029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 12470990 - 12471071
Alignment:
Q  95 taaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    |||||||||||||||| ||| ||||| ||  |||||||||||| ||| |||||||| | |||||||||||||| ||| ||||    
T  12470990 taaaatggggagtgagattaacatcgattaagttcatcggttttttggatctcaaaattaaaaactgagaaccgaactaaac 12471071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 12471700 - 12471821
Alignment:
Q  80 gagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacaca 179  Q
    ||||||||| | || ||||||| |||||||||||| ||||| ||| |||||||| ||  |||||||||||| | ||||||| |||||| ||| ||||       
T  12471700 gagggataatattactaaaatgaggagtgaggttaacatcgattcagttcatcgattctttgaatctcaaaattaaaaactaagaaccgaactaaactag 12471799  T
Q  180 atcggtttagattggttcggtt 201  Q
    |||| ||||  |||||||||||    
T  12471800 atcgatttaagttggttcggtt 12471821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 7995153 - 7995046
Alignment:
Q  92 tagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagat 191  Q
    |||||||||  |||||| |||||  ||||| | ||||||||||||||  |||||||||| ||||||||   ||||||||||||||   ||||||||  ||    
T  7995153 tagtaaaataaggagtgtggttattatcggattggttcatcggtttcacgaatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaat 7995054  T
Q  192 tggttcgg 199  Q
    ||||||||    
T  7995053 tggttcgg 7995046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 32971501 - 32971383
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcg------aggagggataacaatagtaaaatggggagtgaggttagcatcggt 122  Q
    |||| |||| ||||| ||||||||||||||||||| |||||||| || |      ||||||||||| | |   ||||||| |||||||||||||||||||    
T  32971501 agtagtttatgttggactttaattttgagcctaatcataagtgtgtgtgtgtgtgaggagggataatatttcaaaaatggagagtgaggttagcatcggt 32971402  T
Q  123 tcggttcatcggtttcttg 141  Q
    ||||| || ||||| ||||    
T  32971401 tcggtccaacggttccttg 32971383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 12470140 - 12470311
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    ||||||||| ||||| |||||||||||||   ||| |||||||| ||  | ||||||||| | || ||||||||||| |||| ||||||||  ||  |||    
T  12470140 agtattttatgttggactttaattttgagttgaatcataagtgtgtg--aagagggataatattactaaaatggggactgagattagcatcaatttagtt 12470237  T
Q  129 catcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttt 202  Q
    ||||||||  ||| |||||||| | | ||||| |||||  ||||||||   || ||||||| |||| |||||||    
T  12470238 catcggttctttggatctcaaaattagaaactaagaacggaaccaaactagattggtttaggttggctcggttt 12470311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 282
Target Start/End: Complemental strand, 2923125 - 2922970
Alignment:
Q  128 tcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttc-----ggttttaaactgaactagacaaggt 222  Q
    |||||||||||||| |||||||| |||||||   |||||| || ||||||   ||||| |||||||||||     |||||| ||| |||| | |||||||    
T  2923125 tcatcggtttcttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggt 2923026  T
Q  223 cggatacatttttgatttgttggttcgatttagaattttggttttgtccaaaccgcttac 282  Q
     | ||||||||||| |   |||||||| ||| || ||| |||||||||||||||||||||    
T  2923025 tgaatacatttttggt---ttggttcg-tttggactttcggttttgtccaaaccgcttac 2922970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 27226828 - 27226926
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    |||| |||| ||||||  ||||||||  ||||||| |||||||| |   ||||||||||| | ||||||||||| ||||||| ||| |||||||||||||    
T  27226828 agtactttatgttgggacttaattttaggcctaatcataagtgtgtt--aggagggataatattagtaaaatggagagtgagattaccatcggttcggtt 27226925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 2923180 - 2923125
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaat 63  Q
    ||||||||||||  |||| ||||| ||||| ||||| |||||||||||||||||||    
T  2923180 gagaaagtgaatgaattaagtagttttttatgttggactttaattttgagcctaat 2923125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 21378567 - 21378625
Alignment:
Q  117 atcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    |||| |||||||||||||||  |||||||||||| | |||||||||||||| ||||||||    
T  21378567 atcgattcggttcatcggttctttgaatctcaaaat-aaaaactgagaaccgaaccaaac 21378625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 19602226 - 19602356
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    ||||||||| |||||| ||||| |||  || |||| |||||| | || |||||| || || | |||||| ||| | ||||||||||||||| ||||| ||    
T  19602226 agtattttatgttgggatttaactttaggcataatcataagtttgtgtgaggagagaaaatattagtaatatgagaagtgaggttagcatctgttcgatt 19602325  T
Q  129 catcggtttcttgaatctcaaagtgaaaaac 159  Q
    |||| |||  ||| |||||||| | ||||||    
T  19602326 catctgttctttggatctcaaaataaaaaac 19602356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 45595536 - 45595455
Alignment:
Q  95 taaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    ||||||||||||||| ||||||||| ||||| || ||||| |  |||||||||||| | | ||   ||||||||||||||||    
T  45595536 taaaatggggagtgatgttagcatcagttcgatttatcggatatttgaatctcaaaattagaattcgagaaccaaaccaaac 45595455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 1498088 - 1498277
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | ||||||||| ||||| ||| |||||||||| |||| |||||||| |||||| |||||||| | || |||||||||||||    
T  1498088 gagaaagtgaatgtattaaggagtattttaggttggacttcaattttgagcttaatcataagtgtgtgcgagaagggataatattactaaaatggggagt 1498187  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttc 197  Q
     | ||||||||||||||||||||||||||| ||| |||||||| | ||| ||||||||||||||  |||   |||||||||| |||||||    
T  1498188 catgttagcatcggttcggttcatcggtttattggatctcaaaataaaatactgagaaccaaacttaactacatcggtttaggttggttc 1498277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 7239169 - 7239366
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    ||||||||||||||||  | || | ||| ||||| ||||| ||||| |||||||| |||| ||||||| ||| |||||| ||||| | || |||||||||    
T  7239169 atgagagaaagtgaatgaagtaagaagtgttttatgttggactttagttttgagcttaatcataagtgcatgtgaggagagataatattactaaaatggg 7239268  T
Q  104 gagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
     ||||||||||||||||||||| || ||||| |  | | |||| ||| | ||||||| |||||| ||||||||  | ||| ||||  |||||||||||    
T  7239269 aagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactcgatttaagttggttcggtt 7239366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 7244345 - 7244542
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    ||||||||||||||||  | || | ||| ||||| ||||| ||||| |||||||| |||| ||||||| ||| |||||| ||||| | || |||||||||    
T  7244345 atgagagaaagtgaatgaagtaagaagtgttttatgttggactttagttttgagcttaatcataagtgcatgtgaggagagataatattactaaaatggg 7244444  T
Q  104 gagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
     ||||||||||||||||||||| || ||||| |  | | |||| ||| | ||||||| |||||| ||||||||  | ||| ||||  |||||||||||    
T  7244445 aagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactcgatttaagttggttcggtt 7244542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 17770500 - 17770311
Alignment:
Q  12 aagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataa--gtgtatgcgaggagggataacaatagtaaaatggggagtga 109  Q
    ||||||||  |||| | ||||||||| |||||||||||||||||||| |||| ||||  || | ||||||||||| ||| | |||||||||||| ||||     
T  17770500 aagtgaatgaattaaggagtattttatgttgggctttaattttgagcttaataataaatgtttgtgcgaggaggg-taatattagtaaaatgggaagtg- 17770403  T
Q  110 ggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    |||||||||||||| ||||||||  ||  ||| |||||||| | ||||||  ||||| ||| | |||    ||||||||| |||||||||||    
T  17770402 ggttagcatcggtttggttcatctattctttggatctcaaatttaaaaaccaagaactaaatccaactagttcggtttaggttggttcggtt 17770311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 41091980 - 41092088
Alignment:
Q  93 agtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagatt 192  Q
    ||||||||||||| ||  |||| |||| ||||||||||||| || |||| |||||||||| ||||||  |||||  |||||||||   ||||||||||||    
T  41091980 agtaaaatggggaatggagttaacatcagttcggttcatcgattccttggatctcaaagtaaaaaaccaagaactgaaccaaacagtgtcggtttagatt 41092079  T
Q  193 ggttcggtt 201  Q
    |||| ||||    
T  41092080 ggtttggtt 41092088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 31896179 - 31896060
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    |||||||||||||||| |||||   | ||||||| ||||| ||||||||||| ||||||  |||||| | || ||||  |||||| | |||||||||  |    
T  31896179 atgagagaaagtgaatggattataaaatattttatgttggactttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataag 31896080  T
Q  104 gagtgaggttagcatcggtt 123  Q
    ||||| ||||| ||||||||    
T  31896079 gagtgtggttatcatcggtt 31896060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 39786179 - 39786072
Alignment:
Q  69 gtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaacca 168  Q
    |||| |||||| || ||||| | ||||||||||| || |  ||||||||||||||| |||  |||| | |||| |||||||| |||||| |||||||||     
T  39786179 gtgtgtgcgagaagagataatattagtaaaatggagattcgggttagcatcggttcagtttgtcggatccttggatctcaaattgaaaatctgagaaccg 39786080  T
Q  169 aaccaaac 176  Q
    ||||||||    
T  39786079 aaccaaac 39786072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 16746357 - 16746503
Alignment:
Q  50 attttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaa 149  Q
    |||||| ||||||  |||||| | || ||||  |||||| | |||||||||  |||||||||||| |||||| | ||||||||| ||||  | ||||| |    
T  16746357 attttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgaggttatcatcggattggttcatcgatttcacggatctcga 16746456  T
Q  150 agtgaaaaactgagaaccaaaccaaacacaatcggtttagattggtt 196  Q
    | ||||||||   ||| ||||||||||   |||||||| ||||||||    
T  16746457 aatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtt 16746503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 29126269 - 29126207
Alignment:
Q  114 agcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    |||||||||||||||||| ||||| ||| || ||||| | ||||| |||||||||||| ||||    
T  29126269 agcatcggttcggttcattggttttttggatatcaaaataaaaaattgagaaccaaactaaac 29126207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 19947962 - 19947870
Alignment:
Q  46 tttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcggtttc 138  Q
    |||||||||| ||||||  |||||| | || ||||  |||||| | |||||||||  |||||| ||||| |||||| | ||||||||||||||    
T  19947962 tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcggattggttcatcggtttc 19947870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 11846511 - 11846296
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    |||||| || ||||| |||||||||||||| |||| |||||||| || |||||||||||| | || ||||||||||||||||| |||||||  || ||||    
T  11846511 agtattgtatgttggactttaattttgagcttaatcataagtgtgtgtgaggagggataatattactaaaatggggagtgaggatagcatcaatttggtt 11846412  T
Q  129 catcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattg-----gttcggttttaaactgaactagacaaggtc 223  Q
    ||| ||||  ||| |||||||| | |||||| ||||||| ||||||||   |||||||||  |||     |||||||||| |||  ||| | ||||||||    
T  11846411 cattggttcattggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaagttggttcagttcggttttgaaccaaaccaaacaaggtc 11846312  T
Q  224 ggatacatttttgatt 239  Q
    ||||||||||| ||||    
T  11846311 ggatacattttcgatt 11846296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 7176376 - 7176566
Alignment:
Q  3 tatgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatgg 102  Q
    ||||||||||| | |||  |||| | | ||||||| ||||| ||||| |||||||| |||| |||||||| || |||||| ||||| | || ||||||||    
T  7176376 tatgagagaaaataaatgaattaaggaatattttatgttggactttagttttgagcttaatcataagtgtttgtgaggagagataatattactaaaatgg 7176475  T
Q  103 ggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    ||||||||||||||||| ||||||||||        ||| |||||||| | ||||||||| |||| ||||||||   |||||||||| |||||||||||    
T  7176476 ggagtgaggttagcatctgttcggttca--------ttggatctcaaaataaaaaactgataaccgaaccaaactagatcggtttaggttggttcggtt 7176566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 9827029 - 9826836
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | ||||||||| ||||| ||||||| |||||| |||| ||||| || || |||||||||||| | || ||||| ||| |||    
T  9827029 gagaaagtgaatgaattaaggagtattttatgttggactttaatattgagcttaatcataagcgtgtgtgaggagggataatattactaaaacgggaagt 9826930  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    ||||||| |||| ||| ||||||||||||  ||| || ||||| | |||||| ||||| | ||||||||   |||||||||  |||||||||||    
T  9826929 gaggttaacatcagtttggttcatcggttctttggatttcaaaattaaaaaccgagaatcgaaccaaactagatcggtttatgttggttcggtt 9826836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 26880063 - 26879877
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    |||||||||||| |||||   ||||||||| |||| ||||||||||||  |||||        ||||| |||||||||||| | |||| ||||| ||| |    
T  26880063 gagaaagtgaatggattaatgagtattttatgttgagctttaattttggacctaa--------gtatgtgaggagggataatattagtgaaatgaggaat 26879972  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttt 202  Q
    | ||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||  |||||| ||   || ||||| |||||||||||||    
T  26879971 ggggttaccatcggttcggttcatcggttccttgaatctcacaatgaaaaactgagaactcaaccaaccaaggtcagtttatattggttcggttt 26879877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 11971681 - 11971533
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    ||||||||| ||||| |||||||||||||  |||| |||||||| || |||||||||||| | || ||||||||||||||||| ||||||| ||| ||||    
T  11971681 agtattttatgttggactttaattttgagattaatcataagtgtgtgtgaggagggataatattactaaaatggggagtgaggatagcatcagtttggtt 11971582  T
Q  129 catcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaaca 177  Q
    ||| | ||  ||| ||||| || | |||||| ||||||| |||||||||    
T  11971581 cattgattcattggatctctaaattaaaaaccgagaaccgaaccaaaca 11971533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 7551292 - 7551482
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    |||||||||||| ||||| | ||||||||  || | | |||||||||| | ||||| ||||||||    ||||||| |||| | | ||||||||| ||||    
T  7551292 gagaaagtgaatggattaagaagtattttttgtagtgatttaattttgggtctaatcataagtgt----gaggaggaataatatttgtaaaatggagagt 7551387  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggttt 202  Q
    | ||||| |||||||||| ||||||| || |||| ||||| || |||||||   |||||| | ||||||| |  |||||||||||||||||||||    
T  7551388 ggggttaccatcggttcgattcatcgtttccttgtatctcgaaatgaaaaatcaagaaccgacccaaacaaagccggtttagattggttcggttt 7551482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 23300688 - 23300589
Alignment:
Q  29 agtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    ||||||||| ||||| |||||||||||||  |||| |||||||| |  |||||||||||| | || |||||||| |||||| ||||||||||||||||||    
T  23300688 agtattttatgttggactttaattttgagtttaatcataagtgtgtatgaggagggataatattactaaaatggagagtgaagttagcatcggttcggtt 23300589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 1208854 - 1208720
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    ||||| ||||||||||  |||| ||||||||||| | ||  ||||||||||| ||||||| |||||||| || || ||||||||||| ||||||||   |    
T  1208854 atgagggaaagtgaatgaattaagtagtattttatgctgaactttaattttgggcctaatgataagtgtgtgtgaagagggataacattagtaaaacaag 1208755  T
Q  104 gagtgaggttagcatcggttcggttcatcggtttc 138  Q
    ||||| ||||||||||  |||| ||||| ||||||    
T  1208754 gagtggggttagcatcaattcgattcattggtttc 1208720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 2454003 - 2454196
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    ||||||||||||  |||| | | ||||||| ||||| ||||||| |||||| || | ||| |||| || |||||| ||||| | || |||||||||||||    
T  2454003 gagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttattcataggtgtttgtgaggagcgataagattactaaaatggggagt 2454102  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    |||| |||||||| |||||||  | ||||  ||| |||||||| | ||||||  |||| | ||||||||   ||| |||||| |||||||||||    
T  2454103 gaggctagcatcgattcggtttgttggttctttggatctcaaaattaaaaaccaagaatcgaaccaaactatatcagtttaggttggttcggtt 2454196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 32613784 - 32613870
Alignment:
Q  46 tttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatc 132  Q
    ||||||||||||| |||| |||||||| || ||||| | |||| | || ||||||||| | ||||||||||||||||| ||||||||    
T  32613784 tttaattttgagcttaatcataagtgtgtgtgaggatgaataatattattaaaatgggaactgaggttagcatcggtttggttcatc 32613870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 20722459 - 20722412
Alignment:
Q  77 gaggagggataacaatagtaaaatggggagtgaggttagcatcggttc 124  Q
    ||||||||||||   ||||||||||||||||| |||||||||||||||    
T  20722459 gaggagggataatgttagtaaaatggggagtggggttagcatcggttc 20722412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 26186662 - 26186764
Alignment:
Q  95 taaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattgg 194  Q
    ||||||||||||  ||||||| |||||||||  |||||||||  ||| || | ||| | |||||| ||||||||||||||||   |||||||||  ||||    
T  26186662 taaaatggggagcaaggttagaatcggttcgactcatcggttctttggattttaaaattaaaaaccgagaaccaaaccaaactagatcggtttaagttgg 26186761  T
Q  195 ttc 197  Q
    |||    
T  26186762 ttc 26186764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 470 - 665
Alignment:
Q  4 atgagagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggg 103  Q
    |||||||||||||||| |||||   ||||||||| ||||| ||||||||||||||||||  |||||| | || ||||  |||||| | |||||||||  |    
T  470 atgagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaataag 569  T
Q  104 gagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcgg 199  Q
    ||||| ||||| |||||| | ||||||||||||||  | |||||||| ||||||||   |||||||| |||||   ||||||||  ||||||||||    
T  570 gagtgtggttatcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcgg 665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 32678351 - 32678518
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    |||||| |||||| ||||   ||||||||| ||||  |||||||||||||  |||| |||||||| ||  | ||||||||| | || |||||||||||||    
T  32678351 gagaaaatgaataaattaacgagtattttatgttga-ctttaattttgagtttaatcataagtgtgtgttatgagggataatattactaaaatggggagt 32678449  T
Q  108 gaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaac 176  Q
    |||||||||||| ||||| ||||||||||  ||| |||||||| | |||||| ||||||| | ||||||    
T  32678450 gaggttagcatcagttcgattcatcggttcattggatctcaaaattaaaaaccgagaaccgagccaaac 32678518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 11911878 - 11911684
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttggg-ctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggag 106  Q
    ||||||| ||||| ||||   ||||||||| |||||| |||||||||||||| |||| ||||||||  | || ||||||||| | || | ||||||||||    
T  11911878 gagaaagcgaataaattaaacagtattttatgttgggactttaattttgagcttaatcataagtgtgcgtgatgagggataatattactcaaatggggag 11911779  T
Q  107 tgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcggtt 201  Q
    |||| |||| ||||||| ||||||||||||  | | || ||||| | ||||||  ||||| ||| |||||   |||||||||| |||||||||||    
T  11911778 tgagtttagtatcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggtt 11911684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 241
Target Start/End: Original strand, 4407748 - 4407902
Alignment:
Q  92 tagtaaaatggggagtgaggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagat 191  Q
    |||||||||||| ||||  |||| |||||||| |||| ||| |||||||| |||||||| ||||||| |||||| | |||||||||  ||  ||||||||    
T  4407748 tagtaaaatgggaagtggagttaacatcggtttggtttatcagtttcttggatctcaaaatgaaaaaatgagaatcgaaccaaacaagatatgtttagat 4407847  T
Q  192 t-----ggttcggttttaaactgaactagacaaggtcggatacatttttgatttg 241  Q
    |     ||||||||||| ||| |||| |||||| |||| |||| |||| ||||||    
T  4407848 tagtccggttcggttttgaaccgaaccagacaatgtcgaatactttttcgatttg 4407902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 17530858 - 17530776
Alignment:
Q  46 tttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggtt 128  Q
    ||||||||||||| |||| | |||||| || || || |||||| | || |||||||| |||||| ||||||||||||| ||||    
T  17530858 tttaattttgagcttaatcacaagtgtgtgtgaagaaggataatattactaaaatggagagtgaagttagcatcggtttggtt 17530776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 4919693 - 4919575
Alignment:
Q  8 gagaaagtgaatagattacgtagtattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagt 107  Q
    |||||||||||| ||| | | ||||||||| |||| | | |||||||| | ||||| |||||||  || |||||||||||  | ||||||||||| ||||    
T  4919693 gagaaagtgaatggatcaaggagtattttatgttgcgatctaattttgggtctaatcataagtg--tgtgaggagggatagtattagtaaaatggagagt 4919596  T
Q  108 gaggttagcatcggttcggtt 128  Q
    | | ||| |||| ||||||||    
T  4919595 gggattaccatcagttcggtt 4919575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 25785941 - 25785852
Alignment:
Q  110 ggttagcatcggttcggttcatcggtttcttgaatctcaaagtgaaaaactgagaaccaaaccaaacacaatcggtttagattggttcgg 199  Q
    ||||| |||||| | ||||||||||||||  | ||||| || ||||||||   ||||||||||||||   |||||||| |||||||||||    
T  25785941 ggttatcatcggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcgg 25785852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 8433 - 8333
Alignment:
Q  34 tttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttcatcg 133  Q
    |||| ||||| |||||||||||||  | || | |||||| || |||||||||||| | ||  |||||| ||||||||||||||| | |||||||||||||    
T  8433 tttatgttggactttaattttgagtttgatcaaaagtgtgtgtgaggagggataatattaccaaaatgcggagtgaggttagcaccagttcggttcatcg 8334  T
Q  134 g 134  Q
    |    
T  8333 g 8333  T

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Target: scaffold0564 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 6558 - 6483
Alignment:
Q  45 ctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcg 120  Q
    |||||||||||||| |||| |||||||| |  ||| |||||||| | || || |||||||||||||||||||||||    
T  6558 ctttaattttgagcttaatcataagtgtgtatgagaagggataatattactagaatggggagtgaggttagcatcg 6483  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 344266 - 344364
Alignment:
Q  31 tattttacgttgggctttaattttgagcctaattataagtgtatgcgaggagggataacaatagtaaaatggggagtgaggttagcatcggttcggttc 129  Q
    |||||||  |||| ||||||||||||||  ||| ||| |||| || ||| | |||||| |  | |||||||| ||||||||||||||| ||||||||||    
T  344266 tattttatattggactttaattttgagctgaatcatatgtgtgtgtgagaatggataatataactaaaatggagagtgaggttagcattggttcggttc 344364  T

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