View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_low_13 (Length: 282)
Name: NF8177_low_13
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 3090875 - 3090622
Alignment:
| Q |
1 |
cgttgagcaggagaggaaggagatggatcagaaagtgcaacaccaaaggcacttaaattggttatgtttggattcccataaggtgatccaccacgttcaa |
100 |
Q |
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| T |
3090875 |
cgttgagcaggagaggaaggagatggatcagaaagtgcaacaccaaaggcacttaaattggttatgtttggattcccataaggtgatccaccacgttcaa |
3090776 |
T |
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| Q |
101 |
gcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatagaaggatatgattggtgc |
200 |
Q |
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| T |
3090775 |
gcaccaaaaccctatgatttttggacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatagaaggatatgattggtgc |
3090676 |
T |
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| Q |
201 |
tgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatca |
254 |
Q |
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| T |
3090675 |
tgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatca |
3090622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 3082519 - 3082266
Alignment:
| Q |
1 |
cgttgagcaggagaggaaggagatggatcagaaagtgcaacaccaaaggcacttaaattggttatgtttggattcccataaggtgatccaccacgttcaa |
100 |
Q |
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|||||||||||||| |||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082519 |
cgttgagcaggagaagaaggagatgtatcagagagtggaacaccataggcacttaaattggttatgtttggattcccataaggtgatccaccacgttcaa |
3082420 |
T |
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| Q |
101 |
gcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatagaaggatatgattggtgc |
200 |
Q |
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| T |
3082419 |
gcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcggtgccaccaccaactatgatgtaatcatagtaggatatgattggtgc |
3082320 |
T |
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| Q |
201 |
tgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatca |
254 |
Q |
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| T |
3082319 |
tgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatca |
3082266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 5499501 - 5499448
Alignment:
| Q |
129 |
tgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcata |
182 |
Q |
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||||||||| ||||||||||||||||| ||||| || | ||| ||||||||||| |
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| T |
5499501 |
tgttgcagctaaaggacaccctgcagttccacctcccactattatgtaatcata |
5499448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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