View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8177_low_14 (Length: 270)

Name: NF8177_low_14
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8177_low_14
NF8177_low_14
[»] chr8 (5 HSPs)
chr8 (175-237)||(26981034-26981096)
chr8 (176-246)||(26083903-26083974)
chr8 (176-233)||(42932716-42932773)
chr8 (176-246)||(5334273-5334344)
chr8 (174-206)||(7496756-7496788)
[»] chr7 (2 HSPs)
chr7 (176-246)||(20077341-20077412)
chr7 (176-246)||(4407779-4407848)
[»] chr4 (5 HSPs)
chr4 (175-246)||(10427647-10427718)
chr4 (176-237)||(9199512-9199573)
chr4 (176-246)||(9199750-9199821)
chr4 (176-237)||(12094864-12094925)
chr4 (176-237)||(24257703-24257764)
[»] chr6 (3 HSPs)
chr6 (175-246)||(31442516-31442588)
chr6 (176-246)||(20915996-20916067)
chr6 (176-245)||(7867948-7868018)
[»] chr2 (3 HSPs)
chr2 (176-246)||(38996519-38996590)
chr2 (175-246)||(22625386-22625458)
chr2 (176-245)||(28125536-28125606)
[»] chr5 (1 HSPs)
chr5 (176-246)||(6697935-6698006)
[»] chr3 (4 HSPs)
chr3 (173-229)||(2241513-2241569)
chr3 (201-237)||(11582599-11582635)
chr3 (175-245)||(15291460-15291530)
chr3 (174-246)||(39484807-39484881)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 26981034 - 26981096
Alignment:
Q  175 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 237  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  26981034 tatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatattt 26981096  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 26083903 - 26083974
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatc 26083974  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 42932716 - 42932773
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaat 233  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||||||| ||||    
T  42932716 atctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 5334273 - 5334344
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    |||||||||| ||||  || | ||||||| ||||||||||||||||||||||| ||| | ||||||||||||    
T  5334273 atctttcttattaaaaattatctgatcaaacaatatcataccctaattttaacctaagattttccctccatc 5334344  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 7496756 - 7496788
Alignment:
Q  174 ttatctttcttactaaagcttctttgatcaagc 206  Q
    ||||||||||||||||||||| |||||||||||    
T  7496756 ttatctttcttactaaagcttgtttgatcaagc 7496788  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 20077412 - 20077341
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatc 20077341  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 4407779 - 4407848
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    ||||||||||||||||| |||  | |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  4407779 atctttcttactaaagcgtct--ggtcaagcaatatcataccctaattttaacctaatattttccctccatc 4407848  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 10427718 - 10427647
Alignment:
Q  175 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccatc 246  Q
    ||||||| ||| ||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  10427718 tatcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaatatttccctccatc 10427647  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 9199512 - 9199573
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 237  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattt 9199573  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 9199750 - 9199821
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    ||||||||||||||||||| | || ||||||||||||||| || | | ||||| ||||| ||||||||||||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatc 9199821  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 12094925 - 12094864
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 237  Q
    ||||||||||||||||||| |||| |||||| ||   | |||||||||||||| ||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattt 12094864  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 24257703 - 24257764
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 237  Q
    ||||||||||||||||||| |||| |||||||||     |||||||||||||| ||||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatattt 24257764  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 31442516 - 31442588
Alignment:
Q  175 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||||||||||| ||||| ||||||||||||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatc 31442588  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 20916067 - 20915996
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    ||||||||||||||||||| | |||||||||||||| ||||| |||||||||| ||||| ||||||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatc 20915996  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 7868018 - 7867948
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 245  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccat 7867948  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 38996590 - 38996519
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    ||||||||||||||||||| | ||||||||| ||||  ||||||||||||||| ||||| ||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatc 38996519  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 22625458 - 22625386
Alignment:
Q  175 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    |||||||||||||||| ||| | || |||||||||   |||||||||||||||| ||||| ||||||||||||    
T  22625458 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatc 22625386  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 28125536 - 28125606
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 245  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccat 28125606  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 6697935 - 6698006
Alignment:
Q  176 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatc 246  Q
    ||||||||||||||| ||| | || ||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  6697935 atctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatc 6698006  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 2241569 - 2241513
Alignment:
Q  173 cttatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaact 229  Q
    ||||| |||||||||||||||| |||  ||||||||| ||||||| |||||||||||    
T  2241569 cttatttttcttactaaagcttgtttcgtcaagcaatttcataccttaattttaact 2241513  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 11582599 - 11582635
Alignment:
Q  201 tcaagcaatatcataccctaattttaacttaatattt 237  Q
    |||||||||||||||||||||||||||| ||||||||    
T  11582599 tcaagcaatatcataccctaattttaacctaatattt 11582635  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 15291460 - 15291530
Alignment:
Q  175 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccat 245  Q
    |||||||||||||||||||| |||| |||||| ||    ||||||||| ||||| |||| |||||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccat 15291530  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 39484881 - 39484807
Alignment:
Q  174 ttatctttcttactaaagcttctttgatcaagcaatatcat-accctaattttaacttaata-tttccctccatc 246  Q
    ||||||||||||||||||||| |||| |||||| ||||  | |||||| ||||||| ||||| ||||||||||||    
T  39484881 ttatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatc 39484807  T

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