View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_low_16 (Length: 252)
Name: NF8177_low_16
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 52998700 - 52998459
Alignment:
| Q |
11 |
gagaagaacaaagaacaagacgcggttgcattagctacatgatgagattgtatatatttgggattaatattgaccttagaacatgggaattgaatgaaaa |
110 |
Q |
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| T |
52998700 |
gagaagaacaaagaacaagacgcggttgcattaggtacatgatgagattgtatatatttgggattaatattgaccttagaacatgggaattgaatgaaaa |
52998601 |
T |
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| Q |
111 |
acaaaaatgtctaactagctagtagttaattctgcagatagaaataccaatcctccatatcaatatgattctctaccaattaatattttatcgaccaaaa |
210 |
Q |
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| T |
52998600 |
acaaaaatgtctaactagctagtagttaattctgcagatagaaataccaatcctccatatcaatatgattctctaccaattaatattttatcgaccaaaa |
52998501 |
T |
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| Q |
211 |
tttatatctgaatatgactatcattctgctatatctctatat |
252 |
Q |
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| T |
52998500 |
tttatatctgaatatgactatcattctgctatatctctatat |
52998459 |
T |
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