View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_low_17 (Length: 249)
Name: NF8177_low_17
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 2983078 - 2982835
Alignment:
| Q |
6 |
tttggtgttgttacatcgtcatgttgtgacagatcttggctgtctaatttttaattgatggatgagatcaaactgtgtaaaaattagtcaaatcaatctg |
105 |
Q |
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| T |
2983078 |
tttggtgttgttacatcgtcatgttatgacaaatcttggctgtatgatccctaattgatggatgagatcaaactgtatgaaaactaatcaaacctatctg |
2982979 |
T |
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| Q |
106 |
aacggtttgatcatttttcttaaactaagatcatctactacgtgaagcagttacaataggaaatctaagtttatttatttgtgactcacttctagtgtgc |
205 |
Q |
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| T |
2982978 |
aacggtttgatcatttttctatgactgagatcacctactacgtgaagcagttacaataggaaatctaagtttgtttatttgtgactcacttctagtgtgc |
2982879 |
T |
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| Q |
206 |
ccatgcaccgtagtatttagtcgacacatgtggcacgtttaaat |
249 |
Q |
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| T |
2982878 |
ccatgcaccgtagtatttagtcgacacatgtggcacgtttaaat |
2982835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 45409787 - 45409682
Alignment:
| Q |
58 |
aattgatggatgagatcaaactgtgtaaaaattagtcaaatcaatctgaacggtttgatcatttttcttaaactaagatcatctactacgtgaagcagtt |
157 |
Q |
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| T |
45409787 |
aattggtggttgagatcaaactgtgtgaaactg-gtcaaatcaatctgaaccgtttaatcacttgtctactactgagatcacctactgcatgaagcagtt |
45409689 |
T |
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| Q |
158 |
acaatag |
164 |
Q |
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| T |
45409688 |
acaatag |
45409682 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 2123100 - 2123047
Alignment:
| Q |
55 |
tttaattgatggatgagatcaaactgtgtaaaaattagtcaaatcaatctgaac |
108 |
Q |
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| T |
2123100 |
tttaatcggtggctgagatcaaactgtgtaaaaactggtcaaataaatctgaac |
2123047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 24154509 - 24154476
Alignment:
| Q |
55 |
tttaattgatggatgagatcaaactgtgtaaaaa |
88 |
Q |
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| T |
24154509 |
tttaattgatggttgagatcaaactgtgtaaaaa |
24154476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 44971861 - 44971785
Alignment:
| Q |
6 |
tttggtgttgttacatcgtcatgttgtgacagatcttggctgtctaatttttaattgatggatgagatcaaactgtgt |
83 |
Q |
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| T |
44971861 |
tttggtgttgttacagcgtcctgctgtaacagatcttagttgtttaattttt-attgacgactgagatcaaactgtgt |
44971785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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