View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_low_18 (Length: 245)
Name: NF8177_low_18
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7597722 - 7597489
Alignment:
| Q |
1 |
tggcctgtaaatccatttgaggattctggagtacaacaaagtcataagcagattgtacgtcaaatactgtaaatcaattagattagataaatgcccagca |
100 |
Q |
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| T |
7597722 |
tggcctgtaaatccatttgaggattctggagtacaacaaagtcataagcagattgtaagtcaaatactgtaaatcaattagattggataaacgcccagca |
7597623 |
T |
|
| Q |
101 |
ggaaaaagtcaaaacgtacccagtcactgtcataaagaatacaagtgtcggctgcagtgaggtttattcccaacccaccagccctggtggaaagaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7597622 |
ggaaaaagtcaaaacgtacccagtcactgtcataaagaatacaagtgtcggctgcagtgaggtttattcccaacccaccagccctggtggaaagaagaaa |
7597523 |
T |
|
| Q |
201 |
gattctgcagttgctggttgtatcattgatgtcc |
234 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
7597522 |
gattctgcagttgctggttgtatcattgaagtcc |
7597489 |
T |
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