View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_low_19 (Length: 239)
Name: NF8177_low_19
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 52998164 - 52997950
Alignment:
| Q |
1 |
tatacttcaatatgacaatagttttctcctaaaagttaaagatccgtttgattgtaatgcagacggatccgataagaaaaatttatatgagtagaaatat |
100 |
Q |
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| T |
52998164 |
tatacttcaatatgacaatagttttctcctaaaagttaaagatccgtttgattgtaatgtagacggatccgataagaaaaatttatatgagtagaaatat |
52998065 |
T |
|
| Q |
101 |
taaacttttatctcttgtcagaaag------aaagnnnnnnnntactaaacttttatctttacttgtatttgaggcgcatttcaccttgaaactgcccaa |
194 |
Q |
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| T |
52998064 |
taaacttttatctcttgtcagaaagaaaaaaaaaaaaaaaaaatactaaacttttatctttacttgtatttgaggcgcatttcaccttgaaacagcccaa |
52997965 |
T |
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| Q |
195 |
aagatgaatataatt |
209 |
Q |
| |
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||||||||||||||| |
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| T |
52997964 |
aagatgaatataatt |
52997950 |
T |
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