View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8177_low_4 (Length: 390)
Name: NF8177_low_4
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 145 - 375
Target Start/End: Original strand, 34993457 - 34993679
Alignment:
| Q |
145 |
gtatttcttgaaagcatcggtagcataaatgaagtgaacattttgacatttaaatggcgaatcagcattcttaaataaaaatttatacaaagaaatttat |
244 |
Q |
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| T |
34993457 |
gtatttcttgaaagcattggtagcataaataaagtgaacattttgacattt-------gaatcagcattcttaaataaaaatttatataaagaaatttat |
34993549 |
T |
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| Q |
245 |
gtaattcaacctcattgttttgttgtaagaagagacaagacaggtatagaccgatttaacttgtgttgcattcttgtctctaggctttgccttgtgttgg |
344 |
Q |
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| T |
34993550 |
gtagttcaacctcattgttttgttgtaaaaagagacaagacaggtatagacccatttaacttgtgttgcattcttgtctctaggctttgccttgtgttgg |
34993649 |
T |
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| Q |
345 |
tttcgttcctccatcttacttgcatcttcat |
375 |
Q |
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| T |
34993650 |
tttcgttcctccttctta-ttgcatcttcat |
34993679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 20307699 - 20307739
Alignment:
| Q |
87 |
taggacatttattagttcttaaggtgtgcaatgttgcacat |
127 |
Q |
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| T |
20307699 |
tagggcatttattagttcttaagatgtgcaatgttgcacat |
20307739 |
T |
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