View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8177_low_6 (Length: 362)
Name: NF8177_low_6
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_6 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 12093476 - 12093143
Alignment:
| Q |
19 |
ataactagattaaattggagtgtattttcatgtcttttattcattggtgttgaattctcttttgtaatttacagattgaagtttatggaaagtttgctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12093476 |
ataactagattaaattggagtgtattttcatgtcttttattcattggtgttgaattctcttttgtaatttacagattgaagtttatggaaagtttgctta |
12093377 |
T |
|
| Q |
119 |
tgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttggatactcaaaggtatgaagaatcacttcatagg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12093376 |
tgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttggatactcaaaggtatgaagaatcacttcatagg |
12093277 |
T |
|
| Q |
219 |
tcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagagaggtgttaatctaagtgggggtcaaaagcagagaattc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12093276 |
tcttcactgatgaaggaccttgagttgtttccgtatggtgatctaaccgagataggagagagaggtgttaatctaagtgggggtcaaaagcagcgaattc |
12093177 |
T |
|
| Q |
319 |
aacttgctcgagctctttatcagaatgctgatgt |
352 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
12093176 |
aacttgctcgagctctttatcagaattctgatgt |
12093143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 11756445 - 11756778
Alignment:
| Q |
19 |
ataactagattaaattggagtgtattttcatgtcttttattcattggtgttgaattctcttttgtaatttacagattgaagtttatggaaagtttgctta |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11756445 |
ataactaaattaaattggagtgtattttcatgtcttttattcattggtgttgaattctcttttgtaatttacagattgaagtttatggaaagtttgctta |
11756544 |
T |
|
| Q |
119 |
tgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttggatactcaaaggtatgaagaatcacttcatagg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11756545 |
tgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttatgtttggatcacctttggatactcaaaggtatgaagaatcacttcatagg |
11756644 |
T |
|
| Q |
219 |
tcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagagaggtgttaatctaagtgggggtcaaaagcagagaattc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11756645 |
tcttcactgatgaaggaccttgagttgtttccgtatggtgatctaaccgagataggagagagaggtgttaatctaagtgggggtcaaaagcagagaattc |
11756744 |
T |
|
| Q |
319 |
aacttgctcgagctctttatcagaatgctgatgt |
352 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
11756745 |
aacttgctcgagctctttatcaaaatgctgatgt |
11756778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 72 - 350
Target Start/End: Original strand, 11663661 - 11663939
Alignment:
| Q |
72 |
attctcttttgtaatttacagattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgt |
171 |
Q |
| |
|
||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| || ||||||| ||||||| |||||| |
|
|
| T |
11663661 |
attctctttcttgatttacagattgatgtttatggaaagtttgcatatgtttctcaaacagcgtggatacaaacaggtacaatacgggaaaatattttgt |
11663760 |
T |
|
| Q |
172 |
ttggatcacctttggatactcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagat |
271 |
Q |
| |
|
||||||| || ||| |||||| ||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||| |||||||| || ||||| || |
|
|
| T |
11663761 |
ttggatccgagttagatgatcaaagatatcaagaaacacttcaaaggtctgcactgataaaggaccttgagttgtttccctatggtgacctcaccgaaat |
11663860 |
T |
|
| Q |
272 |
aggagagagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgat |
350 |
Q |
| |
|
||| |||||||| ||||| ||||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11663861 |
aggcgagagaggagttaacttaagtggaggtcagaagcagcgaattcaactagctcgtgctctttatcagaatgctgat |
11663939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 82 - 349
Target Start/End: Complemental strand, 11739190 - 11738923
Alignment:
| Q |
82 |
gtaatttacagattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacc |
181 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| |||||||||||||| | |
|
|
| T |
11739190 |
gtaatttacagatcaatgtttatgggaagtttgcttatgtttctcaaacagcatggatacaaacaggaacaatacaagaaaatattttgtttggatcaac |
11739091 |
T |
|
| Q |
182 |
tttggatactcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagaga |
281 |
Q |
| |
|
||||| |||||||||| ||||| ||||| || ||||| |||||||| |||||||| ||||||||| |||||||||| || || || ||||||||| |
|
|
| T |
11739090 |
aatggatgttcaaaggtatcaagaagcactttgtaaatcttcgctgatgaaagaccttgaattgtttccacatggtgatctcactgaaattggagagaga |
11738991 |
T |
|
| Q |
282 |
ggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctga |
349 |
Q |
| |
|
|| ||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11738990 |
ggagttaacttgagtgggggtcaaaagcaacgaattcaacttgctcgtgctctttatcagaatgctga |
11738923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 91 - 350
Target Start/End: Original strand, 11618859 - 11619118
Alignment:
| Q |
91 |
agattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttggatac |
190 |
Q |
| |
|
||||||| ||| |||| ||||||| ||||||||||||||||| ||||| ||||| || || |||| |||||| ||||||||||||| |||||| |
|
|
| T |
11618859 |
agattgatgttcatgggaagtttggatatgtttctcaaacagcatggatacaaacaggcacgatacgtgaaaatattttgtttggatctgagttggatga |
11618958 |
T |
|
| Q |
191 |
tcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagagaggtgttaat |
290 |
Q |
| |
|
|||||| ||| ||||| ||||||| |||||||||||| |||||||||||||||||||| ||||| || || || || ||||| |||||||| |||||| |
|
|
| T |
11618959 |
tcaaagatatcaagaaacacttcagaggtcttcactggaaaaggaccttgagttgtttccctatggagacctcactgaaataggcgagagaggagttaat |
11619058 |
T |
|
| Q |
291 |
ctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgat |
350 |
Q |
| |
|
|||| || ||||||||||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
11619059 |
ttaagcggaggtcaaaagcaacgaattcaacttgctcgcgctctttataagaatgctgat |
11619118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 87 - 350
Target Start/End: Complemental strand, 11673268 - 11673005
Alignment:
| Q |
87 |
ttacagattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttgg |
186 |
Q |
| |
|
||||||||||||||| | || |||||||| ||||||||||||||| | ||||| ||||| || ||||||| ||||||| |||| |||||||| |||| |
|
|
| T |
11673268 |
ttacagattgaagttcacgggaagtttgcatatgtttctcaaacatcatggatacaaacaggtacaatacgggaaaatattttatttggatccgaattgg |
11673169 |
T |
|
| Q |
187 |
atactcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagagaggtgt |
286 |
Q |
| |
|
|| |||||| ||| ||||| |||||| ||||||||| || | |||||||| ||||||||||| |||||||| || || || ||||| |||||||| || |
|
|
| T |
11673168 |
atgatcaaagatatcaagaaacacttcgaaggtcttcattggtaaaggacctcgagttgtttccctatggtgacctcactgaaataggtgagagaggagt |
11673069 |
T |
|
| Q |
287 |
taatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgat |
350 |
Q |
| |
|
|||| ||||||| |||||||| || |||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
11673068 |
taatttaagtggaggtcaaaaacaacgaattcaacttgctcgtgctctctatcaaaatgctgat |
11673005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 350
Target Start/End: Complemental strand, 11709811 - 11709548
Alignment:
| Q |
87 |
ttacagattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttgg |
186 |
Q |
| |
|
||||||||||| |||| || ||||| || ||||||||||||||||| ||||| ||||| || ||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
11709811 |
ttacagattgatatttacgggaagttcgcatatgtttctcaaacagcatggatacaaacaggtacaatacgggaaaatattttgtttggatcggagttgg |
11709712 |
T |
|
| Q |
187 |
atactcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagagaggtgt |
286 |
Q |
| |
|
|| |||||| ||| ||||| ||||||| ||||| ||| || | |||||||||||||| |||| ||||| ||||| || || ||||| |||||||| || |
|
|
| T |
11709711 |
atgatcaaagatatcaagaaacacttcaaaggtcatcattggtaaaggaccttgagttacttccctatggcgatctcacagaaataggcgagagaggagt |
11709612 |
T |
|
| Q |
287 |
taatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgat |
350 |
Q |
| |
|
|||| |||| || ||||| |||||| |||||||||| ||||| ||||||||| |||| |||||| |
|
|
| T |
11709611 |
taatttaagcggaggtcagaagcagcgaattcaactagctcgtgctctttatgagaacgctgat |
11709548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 349
Target Start/End: Complemental strand, 11631376 - 11631114
Alignment:
| Q |
87 |
ttacagattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttgg |
186 |
Q |
| |
|
|||||| |||| ||||| || | |||||| ||||||||||||||| | ||||| ||||| || ||||||| |||||| ||||||||||||| |||| |
|
|
| T |
11631376 |
ttacaggttgatgtttacgggaggtttgcatatgtttctcaaacaccatggatacaaacaggtacaatacgggaaaacattttgtttggatctgaattgg |
11631277 |
T |
|
| Q |
187 |
atactcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagagaggtgt |
286 |
Q |
| |
|
|| |||||| ||| ||||| ||||||| ||||||||| ||| |||||| |||||||| |||| ||||| || || || || ||||| || ||||| || |
|
|
| T |
11631276 |
atgatcaaagatatcaagaaacacttcaaaggtcttcattgaaaaaggactttgagttgcttccctatggcgacctcactgaaataggtgaaagaggagt |
11631177 |
T |
|
| Q |
287 |
taatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctga |
349 |
Q |
| |
|
|||| ||||||| |||||||| ||| |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11631176 |
taatttaagtggaggtcaaaaacagcgaattcaactagctcgtgctctttatcagaatgctga |
11631114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 87 - 350
Target Start/End: Complemental strand, 8254 - 7991
Alignment:
| Q |
87 |
ttacagattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttgg |
186 |
Q |
| |
|
||||||||||| ||| | || |||||||| ||||||||||||||||| ||||| ||||| |||||| ||| |||||| ||||||||||||| |||| |
|
|
| T |
8254 |
ttacagattgacgttcaagggaagtttgcgtatgtttctcaaacagcatggatacaaacaggaacagtacgtgaaaatattttgtttggatctgagttgg |
8155 |
T |
|
| Q |
187 |
atactcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagagaggtgt |
286 |
Q |
| |
|
|| |||||| ||| |||| ||||||| | |||||||||| | ||||||||||||||| |||| |||||||| || || || ||||| |||||||| || |
|
|
| T |
8154 |
atgatcaaagatatcaagagacacttcaaaagtcttcactggtaaaggaccttgagttgcttccctatggtgacctcactgaaataggtgagagaggagt |
8055 |
T |
|
| Q |
287 |
taatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgat |
350 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8054 |
taatttaagtggaggtcaaaagcagcgaattcaacttgctcgtgctctttatcagaatgctgat |
7991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 87 - 350
Target Start/End: Original strand, 44812280 - 44812543
Alignment:
| Q |
87 |
ttacagattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttgg |
186 |
Q |
| |
|
||||||||||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| || |||||| ||| ||||| ||||||||||||||| ||| |
|
|
| T |
44812280 |
ttacagattgatgtatatgggaagtttgcgtatgtttctcaaacagcatggatacaaacaggtacaataagggataatgtattgtttggatcacctatgg |
44812379 |
T |
|
| Q |
187 |
atactcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagataggagagagaggtgt |
286 |
Q |
| |
|
|| |||||| ||| | ||| | ||||||||||||||||| |||||||||||||| || |||| | |||||||| || || || ||||||||||| || |
|
|
| T |
44812380 |
atgctcaaaaatatcaggaaactcttcataggtcttcactagtgaaggaccttgagctgcttccccacggtgatcttactgaaatcggagagagaggggt |
44812479 |
T |
|
| Q |
287 |
taatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgat |
350 |
Q |
| |
|
||| ||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44812480 |
taacttaagtggaggtcagaagcagcgaattcaacttgctcgtgctctttatcagaatgctgat |
44812543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 350
Target Start/End: Original strand, 13233 - 13509
Alignment:
| Q |
74 |
tctcttttgtaatttacagattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgttt |
173 |
Q |
| |
|
||||| || ||| ||||||||||| ||| |||| ||||| || ||||||||||||||||| ||||| ||||| || ||||||| ||||||| | |||||| |
|
|
| T |
13233 |
tctctattctaaattacagattgatgttcatgggaagttcgcatatgtttctcaaacagcatggatacaaacaggcacaatacgggaaaatatcttgttt |
13332 |
T |
|
| Q |
174 |
ggatcacctttggatactcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttccatatggtgatctaaccgagatag |
273 |
Q |
| |
|
||||| ||||| ||| ||| |||| ||||| | ||||||||||| | ||||| |||||||||||| ||||| || || || || |||| |
|
|
| T |
13333 |
ggatctgaaatggatgacgaaaaatatctagaaacacttaagaggtcttcacttctaaaggatcttgagttgttttgctatggagaccttactgaaatag |
13432 |
T |
|
| Q |
274 |
gagagagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgat |
350 |
Q |
| |
|
| || ||||| || ||| ||||||| ||||| |||||| |||||||||| ||||| ||| ||||| ||||||||||| |
|
|
| T |
13433 |
gtgaaagaggagtaaatttaagtggaggtcagaagcagcgaattcaactggctcgtgctttttatgagaatgctgat |
13509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 27957736 - 27957577
Alignment:
| Q |
91 |
agattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatcacctttggatac |
190 |
Q |
| |
|
||||||| ||| |||| ||||||| ||||||||||||||||| ||||| ||||| | || |||| |||||| |||| |||||||| |||||| |
|
|
| T |
27957736 |
agattgatgttcatgggaagtttggatatgtttctcaaacagcatggatacaaacacgcacgatacgtgaaaatattttttttggatccgaattggatga |
27957637 |
T |
|
| Q |
191 |
tcaaaggtatgaagaatcacttcataggtcttcactgatgaaggaccttgagttgtttcc |
250 |
Q |
| |
|
| |||| ||| ||||| ||||||| |||| ||||||| ||||| |||||||||||||| |
|
|
| T |
27957636 |
ttaaagatatcaagaaacacttcagaggttttcactggcaaaggatcttgagttgtttcc |
27957577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 31290933 - 31290846
Alignment:
| Q |
91 |
agattgaagtttatggaaagtttgcttatgtttctcaaacagcttggattcaaactggaacaatacaggaaaatgttttgtttggatc |
178 |
Q |
| |
|
||||||| ||| |||| ||||||| ||||||||||||||||| ||||| ||||| || || |||| |||||| |||| |||||||| |
|
|
| T |
31290933 |
agattgatgttcatgggaagtttggatatgtttctcaaacagcatggatacaaacaggtacgatacgtgaaaatattttttttggatc |
31290846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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