View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8177_low_8 (Length: 308)

Name: NF8177_low_8
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8177_low_8
NF8177_low_8
[»] chr4 (7 HSPs)
chr4 (17-304)||(15581985-15582272)
chr4 (35-115)||(18083069-18083149)
chr4 (35-115)||(36617532-36617612)
chr4 (17-111)||(15527280-15527374)
chr4 (61-115)||(18359232-18359286)
chr4 (61-115)||(36603642-36603696)
chr4 (56-147)||(36643605-36643696)
[»] chr3 (1 HSPs)
chr3 (56-130)||(25596933-25597007)
[»] chr5 (1 HSPs)
chr5 (35-93)||(17667110-17667168)
[»] chr1 (1 HSPs)
chr1 (59-141)||(42602853-42602935)
[»] chr7 (1 HSPs)
chr7 (35-92)||(14677181-14677238)
[»] chr8 (1 HSPs)
chr8 (61-113)||(35335885-35335937)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 15582272 - 15581985
Alignment:
Q  17 gcattctcatttacattatgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctat 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15582272 gcattctcatttacattatgtcttttttaaacactatagacgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctat 15582173  T
Q  117 ccttacattgcattactcagacttttcaactttgaagtgtttccacaacttcatgtctagggttttgtctcttcgtgacaactcggtactattgcagtcg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  15582172 ccttacattgcattactcagacttttcaactttgaagtgtttccacaaatttgtgtctagggttttgtctcttcgtgataactcggtactattgcagtcg 15582073  T
Q  217 attgattttgatggtaatggtggttgtattcagtctagcctacttaaaagggtttcaaattatgttttatctcacgatgtccatctca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||| ||||    
T  15582072 attgattttgatggtaatggtggttgtattcagtctagcctacttaaaaggttttcgaattatgttttatctcacaatgcccaactca 15581985  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 18083069 - 18083149
Alignment:
Q  35 tgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattccta 115  Q
    |||| ||||||||||| | |||||  |||||||||||||||||||||| |||||||||  |||| ||||||||||||||||    
T  18083069 tgtcatttttaaacaccaaagatggtgttcgaacttgcgttttgtctagaagatggaaagatatatggaaacatattccta 18083149  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 36617612 - 36617532
Alignment:
Q  35 tgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattccta 115  Q
    |||| ||||||||||| | |||||  |||||||||||||||||||||| |||||||||  |||| ||||||||||||||||    
T  36617612 tgtcatttttaaacaccaaagatggtgttcgaacttgcgttttgtctagaagatggaaagatatatggaaacatattccta 36617532  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 15527374 - 15527280
Alignment:
Q  17 gcattctcatttacattatgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatatt 111  Q
    ||||| ||||| ||||| |||| ||||| | ||||| ||| || |||||||||||| || |||| ||||||||| |||||||||||||| |||||    
T  15527374 gcattatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgggagcatatttggaaatatatt 15527280  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 18359232 - 18359286
Alignment:
Q  61 gttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattccta 115  Q
    ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||||    
T  18359232 gttcgaactggcattttgtccaaaaggtggaagcatctttggaaacatattccta 18359286  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 36603696 - 36603642
Alignment:
Q  61 gttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattccta 115  Q
    ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||||    
T  36603696 gttcgaactggcattttgtccaaaaggtggaagcatctttggaaacatattccta 36603642  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 36643696 - 36643605
Alignment:
Q  56 atgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctatccttacattgcattactcagacttttcaact 147  Q
    |||| |||| ||| || |||||||| | ||||||||||||| |||||  || |||||||| ||||| ||| |||| |||| |||||||||||    
T  36643696 atgctgttcaaacctgtgttttgtccacaagatggaagcatctttgggcacgtattcctacccttatattacattcctcaaacttttcaact 36643605  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 25596933 - 25597007
Alignment:
Q  56 atgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctatccttacattgcatt 130  Q
    ||||||||| ||||||| |||||||||  ||||||||| || |||||||||||||||| | ||||| ||||||||    
T  25596933 atgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaacatattcccacccttatattgcatt 25597007  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 17667168 - 17667110
Alignment:
Q  35 tgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaag 93  Q
    |||| ||||||||||| | ||| |  |||||||||||||||||||||| ||||||||||    
T  17667168 tgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtctacaagatggaag 17667110  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 42602935 - 42602853
Alignment:
Q  59 ccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctatccttacattgcattactcagacttt 141  Q
    |||||| ||||||| | ||||| ||||||||||||| ||| ||||||| ||||||||  |||| |||| ||| |||| |||||    
T  42602935 ccgttcaaacttgcatcttgtccaaaagatggaagcttatgtggaaacgtattcctactcttatattggattcctcaaacttt 42602853  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 14677181 - 14677238
Alignment:
Q  35 tgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaa 92  Q
    |||| ||||||||||| | ||| |  |||||||||||||||||||||| |||||||||    
T  14677181 tgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtctacaagatggaa 14677238  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 35335885 - 35335937
Alignment:
Q  61 gttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcc 113  Q
    |||| ||||||||||||||| ||||||||||| ||| | ||||||| ||||||    
T  35335885 gttcaaacttgcgttttgtccaaaagatggaaacatctatggaaacgtattcc 35335937  T

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