View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8177_low_9 (Length: 303)
Name: NF8177_low_9
Description: NF8177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8177_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 2218115 - 2218393
Alignment:
| Q |
12 |
tagcagagattaataacttgagacttatcgcaagctgaataatatcaataatcaataattcagtttgtaaaataatatcaaaccatgccttagaaaaata |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2218115 |
tagcagggattaataacttgagacttatcgcaagctgaataatatcaataatcaataattcagtttgtaaaataatatcaaaccatgccttagaaaaata |
2218214 |
T |
|
| Q |
112 |
tccacatcttgcaagttgaatcaaaatagaaatcaagcttgactactactaaattgttttctttggattcacgagttacaatttgatcttgttgattttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2218215 |
tccacatcttgcaagttgaatcaaaatagaaatcaagcttgactactactaaattgttttctttggattcacgagttacaatttgatcttgttgattttg |
2218314 |
T |
|
| Q |
212 |
cgcttcgctgaaaaatgtggtcaattattttcaccttggaagcaatgatataacgaagtttggtacgttgtgttgtttg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2218315 |
cgcttcgctgaaaaatgtggtcaattattttcacattggaagcaatgatataacgaagtttggtacgttgtgttgtttg |
2218393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 1118377 - 1118289
Alignment:
| Q |
59 |
ataatcaataattcagtttgtaaaataatatcaaaccatgccttagaaaaatatccacatcttgcaagttgaatcaaaatagaaatcaag |
148 |
Q |
| |
|
||||||||||||||| |||||| ||||| || | |||| || ||||||| ||||| || ||| ||||||||||| |||||||||||||| |
|
|
| T |
1118377 |
ataatcaataattcaatttgtagaataaaataacaccaaaccatagaaaa-tatccgcaccttacaagttgaatcgaaatagaaatcaag |
1118289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 546369 - 546427
Alignment:
| Q |
119 |
cttgcaagttgaatcaaaatagaaatcaagcttgactact--actaaattgttttcttt |
175 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| || |||||||||||| |||| |
|
|
| T |
546369 |
cttgcaagttgaatcaaaataaagatcaagcttgactgctaaactaaattgtttccttt |
546427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University