View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8178_high_1 (Length: 322)
Name: NF8178_high_1
Description: NF8178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8178_high_1 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 38451694 - 38451998
Alignment:
| Q |
18 |
caatctagcatacagggagcactaaatgaggaatacaatgcatttgatatataagacttatgagttcataactattgatgttttatcctnnnnnnnnctg |
117 |
Q |
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| T |
38451694 |
caatctagcatacagggagcactaaatgaggaatacaatgcatttgatatataagacttatgagttcataactattgatgttttatcctaaaaaaaactg |
38451793 |
T |
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| Q |
118 |
ttgatgttttgtagcctcggcattctcttaaatgagcataaattctcagttttatgagagtgagaaacttagaagaaagtgaaaccaatcagatttccac |
217 |
Q |
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| T |
38451794 |
ttgatgttttttagcctcggcattctcttaaatgagcataaattctcagttttatgagagtgagaaacttagaagaaagtgaaaccaatcagatttccac |
38451893 |
T |
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| Q |
218 |
tttttaaagttaatgttgacaaaaattgctcatcaagatgttcggtgatttaactatgtaatgaagctacaagaacagggatctagtgcacaaaggaaaa |
317 |
Q |
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| T |
38451894 |
tttttaatgttaatgttgacaaaaattgctcatcaagatgttcggtgatttaactatgtaatgaagctacaagaacaaggatctagtgcacaaaggaaaa |
38451993 |
T |
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| Q |
318 |
cttgc |
322 |
Q |
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||||| |
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| T |
38451994 |
cttgc |
38451998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 117 - 293
Target Start/End: Complemental strand, 38634875 - 38634701
Alignment:
| Q |
117 |
gttgatgttttgtagcctcggcattctcttaaatgagcataaattctcagttttatgagagtgagaaacttagaagaaagtgaaaccaatcagatttcca |
216 |
Q |
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| T |
38634875 |
gttgatgtcttgtaacctcggcattcacttaaatgagcctaaattctcagtttgatgagagtgagaa-ctctgaagaaagtgaa-cctatcagatttcct |
38634778 |
T |
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| Q |
217 |
ctttttaaagttaatgttgacaaaaattgctcatcaagatgttcggtgatttaactatgtaatgaagctacaagaac |
293 |
Q |
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| T |
38634777 |
ctttttaacgttaatgttgacaaaaaatgctcatcaaggtgtttgatgatttaactatgtaatgaagcgacaagaac |
38634701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 286
Target Start/End: Complemental strand, 39851894 - 39851739
Alignment:
| Q |
117 |
gttgatgttttgtagcctcggcattctcttaaatgagcataaattctcagttttatgagagtgagaaacttagaagaaagtgaaaccaatcagatttcca |
216 |
Q |
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||||||||||| || |||| |||||||||| |||| | |||||| ||||||||||||| |||||| || || ||||| |||||||||||||||||||| |
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| T |
39851894 |
gttgatgttttataacctcagcattctcttgaatgggactaaattatcagttttatgag--tgagaa-ctcagcagaaattgaaaccaatcagatttcca |
39851798 |
T |
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| Q |
217 |
ctttttaaagttaatgttgacaaaaattgctcatcaagatgttcggtgatttaactatgtaatgaagcta |
286 |
Q |
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| T |
39851797 |
ctttttaatattaatg-----------tgctcatcaaggtgttcaatgatttaactatgtaatgaagcta |
39851739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 34532912 - 34532980
Alignment:
| Q |
140 |
ttctcttaaatgagcataaattctcagttttatgagagtgagaaacttagaagaaagtgaaaccaatcag |
209 |
Q |
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| T |
34532912 |
ttctcttaactgagccaaaattctcagttttacgacagtga-aacctgagaagaaagtgaaatcaatcag |
34532980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 38634926 - 38634898
Alignment:
| Q |
78 |
tgagttcataactattgatgttttatcct |
106 |
Q |
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| T |
38634926 |
tgagttcataactattgatgttttatcct |
38634898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 116 - 289
Target Start/End: Complemental strand, 44476420 - 44476248
Alignment:
| Q |
116 |
tgttgatgttttgtagcctcggcattctcttaaatgagcataaattctcagttttatgagagtgagaaacttagaagaaagtgaaaccaatcagatttcc |
215 |
Q |
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|||||||||||| || | ||||| |||||||| |||| | |||||||||||||| | |||||||| || ||||||||||||||||||| |||||||| |
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| T |
44476420 |
tgttgatgttttataacatcggcgttctcttacatgaatctgaattctcagttttaggtaagtgagaa-ctcagaagaaagtgaaaccaataagatttcc |
44476322 |
T |
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| Q |
216 |
acttttta--aagttaatgttgacaaaaattgctcatcaagatgttcggtgatttaactatgtaatgaagctacaa |
289 |
Q |
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||||||| | || ||||| |||||| ||||||||||| ||||| |||||||||||||||||| |||||||| |
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| T |
44476321 |
acttttttttatgtaaatgtagacaaac--tgctcatcaaggtgttcaatgatttaactatgtaatgcagctacaa |
44476248 |
T |
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