View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8179_high_1 (Length: 596)
Name: NF8179_high_1
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8179_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 6 - 577
Target Start/End: Complemental strand, 3576092 - 3575522
Alignment:
| Q |
6 |
ctggctatattattcttgagtcattgaatgtgttgataatgagcattgcataggagaattgaggttttctagttgtggaagttgtaggaaattattagca |
105 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576092 |
ctggccatattgttcttgagtcattgaatgtgttgataatgagcattgcataggagaattgaggttttctagttgtggaagttgtaggaaattattagca |
3575993 |
T |
|
| Q |
106 |
tcattattattaatgtgtatattgtattgcaattgatccaactcttgtttgcaagggtaatgctgttgttgatgttggtatgatgcattataagggtgat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575992 |
tcattattattaatgtgtatattgtattgcaattgatccaactcttgtttgcaaggataatgctgttgttgatgttggtatgatgcattataagggtgat |
3575893 |
T |
|
| Q |
206 |
gagaagaaattctgcttggggattcaagctctgattgcatgaatgatacttgatcatcataccaacatggtgaatcgtccattttcctcattgttgtagc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575892 |
gagaagaaattctgcttggggattcaagctctgattgcatgaatgatacttgatcatcataccaacatggtgaatcgtccattttcctcattgttgtagc |
3575793 |
T |
|
| Q |
306 |
tattcgtttcttgaacactttacacacaacccatccttcttcctataaaatatgtgcttattacattagacaagatgataatatatatattcttgttttt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||| |||||||||||||||| |
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| T |
3575792 |
tattcgtttcttgaacactttacacacaacccatccttcttcctataaaatatgtgcttattacattagacgacaagatgata-atatattcttgttttt |
3575694 |
T |
|
| Q |
406 |
cagaaaaagaaagaaaatattaaatatgtgcttattataagtattattacctgaggagtagttccattttcatttgtttctaagcgatactcatgcatga |
505 |
Q |
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| T |
3575693 |
cagaaaaagaaagaaaatattaaatatgtgcttattataagtattattacctgaggagtagttccattttcatttgtttctaagcgatactcatgcatga |
3575594 |
T |
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| Q |
506 |
tccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaatcagac |
577 |
Q |
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| T |
3575593 |
tccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaatcagac |
3575522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 8450273 - 8450197
Alignment:
| Q |
496 |
tcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaat |
572 |
Q |
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| T |
8450273 |
tcatgcatgatccaatcagatttctgtccattaggggctcttcctttgtagaaaacaagggtcttcctcatcccaat |
8450197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 492 - 573
Target Start/End: Complemental strand, 9003448 - 9003367
Alignment:
| Q |
492 |
atactcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaatc |
573 |
Q |
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| T |
9003448 |
atactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatc |
9003367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 496 - 575
Target Start/End: Original strand, 32225528 - 32225607
Alignment:
| Q |
496 |
tcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaatcag |
575 |
Q |
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||||||||||||||||||| ||| || |||||||||||||||||||| ||||| || || ||||| |||||||||||||| |
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| T |
32225528 |
tcatgcatgatccaatcagttttctgtccattaggtgctcttcctttgtagaaaacgagtgtcttcctcattccaatcag |
32225607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 12276746 - 12276670
Alignment:
| Q |
496 |
tcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaat |
572 |
Q |
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| T |
12276746 |
tcatgcataatccaatcagtcttttgtccatgaggagctctacctttgtagaacacaagagtctttctcattccaat |
12276670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 576
Target Start/End: Original strand, 42048483 - 42048592
Alignment:
| Q |
467 |
ttccattttcatttgtttctaagcgatactcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcat |
566 |
Q |
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| T |
42048483 |
ttccattttgattagtttcaagacggtactcatgcatgatccaatcagatttctgtccatttggggcacgtcctttgtaaaacactagagtctttctcat |
42048582 |
T |
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| Q |
567 |
tccaatcaga |
576 |
Q |
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|||| |||| |
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| T |
42048583 |
cccaaccaga |
42048592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 526
Target Start/End: Complemental strand, 26496974 - 26496938
Alignment:
| Q |
490 |
cgatactcatgcatgatccaatcagatttttgaccat |
526 |
Q |
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||||||||||||||||||||||||| ||| ||||||| |
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| T |
26496974 |
cgatactcatgcatgatccaatcagttttgtgaccat |
26496938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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