View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8179_high_10 (Length: 268)
Name: NF8179_high_10
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8179_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7081902 - 7082125
Alignment:
| Q |
1 |
tttgttgaatggattcaaactcaagttttcttaggcctagttggtgattaatggttggatttggatcatcaccaaagaagtgaagttctaaccttttttc |
100 |
Q |
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| T |
7081902 |
tttgttgaatggattcaaactcaagttttcttaggcctagttggtgattaatggttggatttggatcatcaccaaagaaatgaagttctaatcttttttc |
7082001 |
T |
|
| Q |
101 |
aaagccttcaaaaccagaaaattccattttgggaacaagtnnnnnnnnnnnnnnnnnntagatttggttttagtgttgaagtagaggtgagggaaaggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7082002 |
aaagccttcaaaaccagaaaattccattttgggaacaagtgagagagggagagatagatagatttggttttagtgttgaagtagaggtgagagaaaggtt |
7082101 |
T |
|
| Q |
201 |
ggggggtgtagttggtatttatag |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7082102 |
ggggggtgtagttggtatttatag |
7082125 |
T |
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