View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8179_high_5 (Length: 344)

Name: NF8179_high_5
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8179_high_5
NF8179_high_5
[»] chr1 (18 HSPs)
chr1 (1-328)||(13094585-13094912)
chr1 (1-328)||(13130014-13130341)
chr1 (1-328)||(13161707-13162034)
chr1 (1-265)||(13007386-13007650)
chr1 (3-266)||(13069917-13070180)
chr1 (3-301)||(13101188-13101486)
chr1 (3-301)||(19727341-19727639)
chr1 (3-292)||(13204647-13204936)
chr1 (2-268)||(30367847-30368113)
chr1 (108-223)||(13244302-13244417)
chr1 (9-223)||(13271780-13271997)
chr1 (9-220)||(19278952-19279166)
chr1 (14-268)||(13064952-13065206)
chr1 (6-75)||(13086298-13086367)
chr1 (124-207)||(12963708-12963791)
chr1 (128-310)||(13214132-13214314)
chr1 (17-79)||(13080793-13080855)
chr1 (9-79)||(12963803-12963873)
[»] chr7 (2 HSPs)
chr7 (4-58)||(12164462-12164516)
chr7 (4-58)||(12175987-12176041)
[»] chr8 (1 HSPs)
chr8 (4-58)||(36668314-36668368)
[»] chr6 (1 HSPs)
chr6 (126-223)||(31396459-31396557)
[»] chr4 (1 HSPs)
chr4 (4-58)||(3321496-3321550)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 13094585 - 13094912
Alignment:
Q  1 agatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaat 100  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13094585 agatatgctcaaaaggtacaggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaat 13094684  T
Q  101 ccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgaga 200  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  13094685 ccgataatcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgaga 13094784  T
Q  201 gctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttcttta 300  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13094785 gctgaactaattgtaccatttccggcaaatatcatagtaaatgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcattcttta 13094884  T
Q  301 gggcgtttaccatgcctaaaaagcattg 328  Q
    |||| ||||||||||||||||| |||||    
T  13094885 gggcttttaccatgcctaaaaaacattg 13094912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 13130014 - 13130341
Alignment:
Q  1 agatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaat 100  Q
    |||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13130014 agatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagatccacatgcctcaaagtaat 13130113  T
Q  101 ccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgaga 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  13130114 ccgattaccctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgaga 13130213  T
Q  201 gctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttcttta 300  Q
    ||||||| ||||| ||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||||    
T  13130214 gctgaactaattgaaccatttccggcaaaaaacatagtaaatgcagtatctctaagatacttctcactgatttcaccctttccatatccttcattcttta 13130313  T
Q  301 gggcgtttaccatgcctaaaaagcattg 328  Q
    |||| ||||||||||||||||| |||||    
T  13130314 gggcttttaccatgcctaaaaaacattg 13130341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 13161707 - 13162034
Alignment:
Q  1 agatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaat 100  Q
    |||||||||||||||||| ||| |||||||| || |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  13161707 agatatgctcaaaaggtataggtggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagaaccacatccctcaaaataat 13161806  T
Q  101 ccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgaga 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  13161807 ccgattatcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactgaga 13161906  T
Q  201 gctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttcttta 300  Q
    ||||||| ||||| ||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||||    
T  13161907 gctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtatctctaagatacttctcactgatttccccctttccatatccttctttcttta 13162006  T
Q  301 gggcgtttaccatgcctaaaaagcattg 328  Q
    |||| ||||||||||||||||| |||||    
T  13162007 gggcttttaccatgcctaaaaaacattg 13162034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 13007386 - 13007650
Alignment:
Q  1 agatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaat 100  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| | |    
T  13007386 agatatgctcaaaaggtacaggaggataaagcctcatggcttcacatagagctccatggaggtacactagcttatcaagatccacatctctcaaaggagt 13007485  T
Q  101 ccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgaga 200  Q
    | |||| |||||||||||   ||| ||||||||||| |||||||| |||||  ||||||||||||||| |||||||| | ||||||| ||||||||||||    
T  13007486 ctgattctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgaga 13007585  T
Q  201 gctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctc 265  Q
     |||||| |||||| |||||||| || || |  | ||| ||  || |||||||||||||||||||    
T  13007586 cctgaactaattgtgccatttcctgctaaaaagagagtgaggacattgtctctaagatacttctc 13007650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 13070180 - 13069917
Alignment:
Q  3 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatcc 102  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||| ||| ||| | ||     
T  13070180 atatgctcaaaaggtacaggaggataaagtctcaaggtttcacatatagctccatgaaggtacactagattatcaagatccacatctctccaaggagtct 13070081  T
Q  103 gattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagc 202  Q
    |||| |||||||||||   ||| |||||||| || |||||||| |||||  ||||||||||||||| |||||||| | ||||||| |||||||||||| |    
T  13070080 gattctcctcttgtgtgggccagttatcttttatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacc 13069981  T
Q  203 tgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctca 266  Q
    ||||  || ||| |||||||| || || |  | ||  |||||| ||||||||||||||||||||    
T  13069980 tgaagtaactgtgccatttcctgctaaaaagagagagagtgcattgtctctaagatacttctca 13069917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 301
Target Start/End: Original strand, 13101188 - 13101486
Alignment:
Q  3 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatcc 102  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| | |||| ||| ||| ||||     
T  13101188 atatgctcaaaaggtacaggaggataaagcctcaaggtttcacatatagctccatggaggtacactagcttatcaagatactcatctctcgaaggaatct 13101287  T
Q  103 gattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagc 202  Q
    |||| |||||||||||    || ||||||||||| |||||||| |||||  ||||||||||||||| ||| |||| | ||||||| ||||||||||||||    
T  13101288 gattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccagaaaaaccaactgagagc 13101387  T
Q  203 tgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctttag 301  Q
    ||||| || ||  |||||||| || || |  | ||| | | || ||||||||||||||||||||   ||||| |||||||||  |||||| ||| ||||    
T  13101388 tgaactaactgggccatttcctgctaaaaagagagtgattacattgtctctaagatacttctcatccatttccccctttccagatccttccttcgttag 13101486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 301
Target Start/End: Original strand, 19727341 - 19727639
Alignment:
Q  3 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatcc 102  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||||||||||||| ||||||| | ||     
T  19727341 atatgctcaaaaggtacaggaggataaagtctcaaggcttaacatagatctccgtggaggtacactagcttatcaagatccacatctctcaaaggagtct 19727440  T
Q  103 gattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagc 202  Q
    | || |||||||||||   ||| ||||||||||| |||||||| |||||  |||| |||||||||| ||| |||| | |||| || |||||||||||| |    
T  19727441 ggttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacc 19727540  T
Q  203 tgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctttag 301  Q
    || || || ||  |||||||| || || |  | ||| |||  | |||||||||||||||||||| | ||||| |||||||||  |||||| ||| ||||    
T  19727541 tgtactaactgggccatttcctgctaaaaagagagtgagtaaattgtctctaagatacttctcattcatttccccctttccagatccttccttcattag 19727639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 292
Target Start/End: Original strand, 13204647 - 13204936
Alignment:
Q  3 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatcc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||| ||| ||| ||||     
T  13204647 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatgaaggtacactagcttatcaagatactcatctctcgaaggaatct 13204746  T
Q  103 gattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagc 202  Q
    |||| |||||||||||    || ||||||||||| |||||||| |||||  ||||||||||||||| ||| |||| | |||| || |||||||| ||| |    
T  13204747 gattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaaaaaccaacttagacc 13204846  T
Q  203 tgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttc 292  Q
    ||||| |  || |||| |||| || || |  | ||  |||| |  |||||||||| ||||| |||| |||||| ||||||||| ||||||    
T  13204847 tgaactagctggaccacttcctgctaagaagagagagagtgtatcgtctctaagaaacttcccactcatttcttcctttccatatccttc 13204936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 268
Target Start/End: Complemental strand, 30368113 - 30367847
Alignment:
Q  2 gatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatc 101  Q
    |||| ||||||||||||||| |||||| |  |||| || |||||||||||||||||||||||| ||||||||||||||     |  || |  |||| |||    
T  30368113 gataagctcaaaaggtacagtaggatacaacctcatggattcacatatagctccatggaggtagactagcttatcaaggctttccaccattgaagttatc 30368014  T
Q  102 cgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagag 201  Q
    | ||| || | || || ||  ||||||||||||||||||||||| |||||  ||||||||||||||| |||||||| | ||||||| ||||||||||||     
T  30368013 caattctcatgttttgatacacaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagac 30367914  T
Q  202 ctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcact 268  Q
     ||||| || ||| ||||| || || || |  | ||  |||||| ||||||||||||||||||||||    
T  30367913 ttgaactaagtgtgccattacctgctaacaaaagagagagtgcattgtctctaagatacttctcact 30367847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 13244417 - 13244302
Alignment:
Q  108 tcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagctgaac 207  Q
    |||||||||||||  ||||||||||||||||||||||| |||||  ||||| ||||||||| |||||||| | |||| ||||||||||| ||| ||||||    
T  13244417 tcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 13244318  T
Q  208 caattgtaccatttcc 223  Q
     |||||| ||||||||    
T  13244317 taattgttccatttcc 13244302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 13271780 - 13271997
Alignment:
Q  9 tcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagta---atccgat 105  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||| |||| ||||| |  ||||||||||  |   || |  | ||| ||   |||  ||    
T  13271780 tcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagcttatcaatgttttcaacatttaaattattgatcaaat 13271879  T
Q  106 tatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagctga 205  Q
    | |||||||||||||  |||| |||||||||||||||||| | |||| |||||||| |||||| |||||||| | |||| ||||||||||| ||| ||||    
T  13271880 tctcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattaggatgagttgaaacaagccaaaagaaccaacttagacctga 13271979  T
Q  206 accaattgtaccatttcc 223  Q
    || || ||| ||||||||    
T  13271980 actaactgttccatttcc 13271997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 19279166 - 19278952
Alignment:
Q  9 tcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaa---gtaatccgat 105  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||||||| || || |||||||||||||| ||     | || |||   || |||  ||    
T  19279166 tcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaagctctttcacactaaaatttgtgatcaaat 19279067  T
Q  106 tatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagctga 205  Q
    ||||||||| |||||| || ||| | |||||||||||||| |||||| |||| |||||||||| |||||| |   |||| ||||||||| ||||| | ||    
T  19279066 tatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccga 19278967  T
Q  206 accaattgtaccatt 220  Q
    || |||||| |||||    
T  19278966 actaattgttccatt 19278952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 13065206 - 13064952
Alignment:
Q  14 aggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctct 113  Q
    |||||||||||||||||| || |||||||||||||||||||| |||||||| | ||| |||||||| |   |  |  |  ||||||||   || || ||     
T  13065206 aggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaattagtttatcaagcttttccacaattgaagtaatcaagttttcatca 13065107  T
Q  114 tgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagctgaaccaattg 213  Q
    |  | ||  ||||||||||| ||||||||||| || ||  ||||||||| ||||| |  ||||| | |||| ||||||||||||||| |||||| || ||    
T  13065106 tcagatagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactg 13065007  T
Q  214 taccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcact 268  Q
    | || ||||| || || |  | | | | |||||||||||||||||||||||||||    
T  13065006 tgccgtttcccgctaacaatagattgactgcagtgtctctaagatacttctcact 13064952  T

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Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 13086298 - 13086367
Alignment:
Q  6 tgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttat 75  Q
    |||| ||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||    
T  13086298 tgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagtttat 13086367  T

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Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 12963791 - 12963708
Alignment:
Q  124 aattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagctgaac 207  Q
    |||||||||| ||||||||||| |||||   |||||||||||||| |||||||| | |||| ||||||||||| ||| ||||||    
T  12963791 aattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 12963708  T

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Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 310
Target Start/End: Original strand, 13214132 - 13214314
Alignment:
Q  128 atctttgatctcttgaatgattttttcttccacaataggataagttgaaagaggccagaagaaccaactgagagctgaaccaattgtaccatttccggca 227  Q
    |||||| || |||||||| |||||  ||||||||||| ||| |||||||| | ||||||| |||||| ||||| |||||| || ||  |||||||| ||     
T  13214132 atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgct 13214231  T
Q  228 aatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctttagggcgtttac 310  Q
    || |  | ||| |  ||| ||||||||||||||||||||   ||||| |||||||||  |||||| ||| |||| || |||||    
T  13214232 aaaaagagagtgatcgcattgtctctaagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttac 13214314  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 13080855 - 13080793
Alignment:
Q  17 tacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaag 79  Q
    ||||| |||||| || || |||||||||||||| |||||||| ||||| ||||||||||||||    
T  13080855 tacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaag 13080793  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 12963873 - 12963803
Alignment:
Q  9 tcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaag 79  Q
    ||||| |||| |||||||||||| || || |||||||| ||||||||||| || || || |||||||||||    
T  12963873 tcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaag 12963803  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 12164462 - 12164516
Alignment:
Q  4 tatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatg 58  Q
    |||||||||||||||  || |||||||| |||||||||||||||| |||||||||    
T  12164462 tatgctcaaaaggtatcggcggataaagcctcaaggcttcacataaagctccatg 12164516  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 12175987 - 12176041
Alignment:
Q  4 tatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatg 58  Q
    ||||||| ||||| || ||||||||||| |||||||||||||||| |||||||||    
T  12175987 tatgctctaaaggaaccggaggataaagcctcaaggcttcacataaagctccatg 12176041  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 36668314 - 36668368
Alignment:
Q  4 tatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatg 58  Q
    |||||||||||||||  || |||||||| || ||||||||||||| |||||||||    
T  36668314 tatgctcaaaaggtattggtggataaagccttaaggcttcacataaagctccatg 36668368  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 31396557 - 31396459
Alignment:
Q  126 ttatctttgatctcttgaatgattttttcttccacaataggataagttg-aaagaggccagaagaaccaactgagagctgaaccaattgtaccatttcc 223  Q
    |||||||  ||||||||||| |||||  |||||||| |||||| ||||| ||| | ||||||| ||||||| ||||  ||||| |||||| ||||||||    
T  31396557 ttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccatttcc 31396459  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 3321550 - 3321496
Alignment:
Q  4 tatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatg 58  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||| |||| ||||    
T  3321550 tatgctcaaaagggacaggtggataaagtcttaaggattcacataaagctgcatg 3321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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