View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8179_low_1 (Length: 713)
Name: NF8179_low_1
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8179_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 647; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Complemental strand, 41571693 - 41571010
Alignment:
| Q |
18 |
atatgcatcatctctcaacttacacttcaatttatctataacatgcttatccaatttcaaagacttaaacccatttcccatgtgcctaaaatgccattgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571693 |
atatgcatcatctctcaacttacacttcaatttatctataatctgcttatccaatttcaaagacttaaacccatttcccatgtgcctaaaatgccattgc |
41571594 |
T |
|
| Q |
118 |
ctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571593 |
ctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattag |
41571494 |
T |
|
| Q |
218 |
gatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnnggtgcatcata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41571493 |
gatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacaaaaaaaggtgcatcata |
41571394 |
T |
|
| Q |
318 |
acaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571393 |
acaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatca |
41571294 |
T |
|
| Q |
418 |
agtagattctcaaatttaaaataacaattcacagcaacaaactcatttttccttatcttaaaatcctcaactttgatactttcccaattttttgcaatac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41571293 |
agtagattctcaaatttaaaataacaattcacagcaacaaactcatttttccttatcttaaaatcctcaactttgatactttcccaatttttcgcaatac |
41571194 |
T |
|
| Q |
518 |
cattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagcctaagacctgttccattcactctctccgacaaatttggaagatctatccctgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41571193 |
cattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagcctaagacctgttccattcactctctccaacaaatttggaagatctatccctgt |
41571094 |
T |
|
| Q |
618 |
gatcttcaacttgggtggcccaccagatcttttcgataaacgaagcattaaaccaggccacttgaaaccgtaaccaacaccaaa |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571093 |
gatcttcaacttgggtggcccaccagatcttttcgataaacgaagcattaaaccaggccacttgaaaccgtaaccaacaccaaa |
41571010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Complemental strand, 41590641 - 41589958
Alignment:
| Q |
18 |
atatgcatcatctctcaacttacacttcaatttatctataacatgcttatccaatttcaaagacttaaacccatttcccatgtgcctaaaatgccattgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
41590641 |
atatgcatcatctctcaacttacacttcaatttatttataatctgcttatccaatttcaaagacctaaacccatttcccatgtgcctagaatgccaatgc |
41590542 |
T |
|
| Q |
118 |
ctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || |
|
|
| T |
41590541 |
atatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatcattcccccaaaaaactacctcaaacatcaacctaaaag |
41590442 |
T |
|
| Q |
218 |
gatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnnggtgcatcata |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
41590441 |
gatcctcacgttcaacattgttgtaatcaagcatatcaaacaatgctgaataataaaaaacagcttccttaaaccttgtcacaaaaaaaggtgcatcata |
41590342 |
T |
|
| Q |
318 |
acaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatca |
417 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| ||||||||| |
|
|
| T |
41590341 |
accaccattaacaatgctatgaataaatatattcggatttgccttcttaatcaaatccaaaacagcacccctcggattctccgaaacaactgtctcatca |
41590242 |
T |
|
| Q |
418 |
agtagattctcaaatttaaaataacaattcacagcaacaaactcatttttccttatcttaaaatcctcaactttgatactttcccaattttttgcaatac |
517 |
Q |
| |
|
||||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41590241 |
ggtagattctcaaacttaaacacacaagtcactgcaacaaactcatttttccttatcttaaaatcctgaactttgatactttcccaattttttgcaatac |
41590142 |
T |
|
| Q |
518 |
cattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagcctaagacctgttccattcactctctccgacaaatttggaagatctatccctgt |
617 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||| || |||||||||||||||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
41590141 |
cattgtactcaaaaggaacattgaaacgtttgcaataacttgaaagcctaagacctgtttcattcactctctccaatgaatttggaagatctatccctgt |
41590042 |
T |
|
| Q |
618 |
gatcttcaacttgggtggcccaccagatcttttcgataaacgaagcattaaaccaggccacttgaaaccgtaaccaacaccaaa |
701 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
41590041 |
gatcctcaatttgggtggcccaccagatcttttcgataaacgatatataaaaccaagccacttgaaaccataaccaacaccaaa |
41589958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Complemental strand, 41557981 - 41557298
Alignment:
| Q |
18 |
atatgcatcatctctcaacttacacttcaatttatctataacatgcttatccaatttcaaagacttaaacccatttcccatgtgcctaaaatgccattgc |
117 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
41557981 |
atatgcatcatttctcaacctacccttcaatttatctataatctgcttattcaatttcaaagacctaaacccatttcctatgtgcctagaatgccaatgc |
41557882 |
T |
|
| Q |
118 |
ctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattag |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| || |
|
|
| T |
41557881 |
ctgtatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatctttcccccaaacgtctccctcaaacatcaacctaacag |
41557782 |
T |
|
| Q |
218 |
gatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnnggtgcatcata |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||| |||| || |
|
|
| T |
41557781 |
gatcctcacgttcaacattgttgttatcaagcatatcaaacaatgctgaataatgaaaaacagcttccttaaaccttgtcacaaaaaaaggttcatcgta |
41557682 |
T |
|
| Q |
318 |
acaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatca |
417 |
Q |
| |
|
|| ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||| | | || |||||||| |
|
|
| T |
41557681 |
accaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacagcacccttcggattctccgaaactactgtctcatcc |
41557582 |
T |
|
| Q |
418 |
agtagattctcaaatttaaaataacaattcacagcaacaaactcatttttccttatcttaaaatcctcaactttgatactttcccaattttttgcaatac |
517 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41557581 |
agtagattctcaaacttaaacaaacaattcacagcaacaaactcgtttttccttatgttaaaatcttcaactttgatactttcccaattttttgcaatac |
41557482 |
T |
|
| Q |
518 |
cattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagcctaagacctgttccattcactctctccgacaaatttggaagatctatccctgt |
617 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||| ||||||||||||||| ||| | |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
41557481 |
cattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagcctaagaccagtttctttcactctctccaatgaatttggaagatctatccctgt |
41557382 |
T |
|
| Q |
618 |
gatcttcaacttgggtggcccaccagatcttttcgataaacgaagcattaaaccaggccacttgaaaccgtaaccaacaccaaa |
701 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||| ||| | || ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
41557381 |
gatcctcaatttgggtggcccaccggatcttttcgatagacggtgtataaaagcaggccacttgaaaccataaccaacaccaaa |
41557298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Complemental strand, 41584111 - 41583427
Alignment:
| Q |
18 |
atatgcatcatctctcaacttacacttcaatttatctataacatgcttatccaatttcaaa-gacttaaacccatttcccatgtgcctaaaatgccattg |
116 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||||||| ||||||| |||||||||| ||| ||||||||||| | ||||||||| ||||||| || |
|
|
| T |
41584111 |
atatgcatcatttctcaacctacccttcaatttatctataatctgcttattcaatttcaaaagacctaaacccatttactatgtgcctagaatgccaatg |
41584012 |
T |
|
| Q |
117 |
cctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacatcaacctatta |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
41584011 |
cctgtatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaacacttcctcaaacatcaacctaata |
41583912 |
T |
|
| Q |
217 |
ggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnnggtgcatcat |
316 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||| ||| |||| | |
|
|
| T |
41583911 |
ggatcctcacgttcaacattgttgtgatcaagcgtatcaaacaatgctgaataatgaaaaacagcttccttaaaccttgtcacaaaaaaaggttcatcgt |
41583812 |
T |
|
| Q |
317 |
aacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatc |
416 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||| ||||| | |||||||||| | | || |||||||| |
|
|
| T |
41583811 |
aaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacatcacccttcggattctccgaaactactgtctcatc |
41583712 |
T |
|
| Q |
417 |
aagtagattctcaaatttaaaataacaattcacagcaacaaactcatttttccttatcttaaaatcctcaactttgatactttcccaattttttgcaata |
516 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41583711 |
cagtagattctcaaacttaaacaaacaattcacagcaacaaactcgtttttccttatcttaaaatcttcaactttgatactttcccaattttttgcaata |
41583612 |
T |
|
| Q |
517 |
ccattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagcctaagacctgttccattcactctctccgacaaatttggaagatctatccctg |
616 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||| ||||||||||||||| ||| | |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
41583611 |
ccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagcctaagaccagtttctttcactctctccaatgaatttggaagatctatccctg |
41583512 |
T |
|
| Q |
617 |
tgatcttcaacttgggtggcccaccagatcttttcgataaacgaagcattaaaccaggccacttgaaaccgtaaccaacaccaaa |
701 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||||| ||| | || ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
41583511 |
tgatcctcaatttgggtggcccaccggatcttttcgatagacggtgtataaaagcaggccacttgaaaccataaccaacaccaaa |
41583427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 41598622 - 41598570
Alignment:
| Q |
121 |
tatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcat |
173 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||| |||| ||||||||| |
|
|
| T |
41598622 |
tatgtctcgggcctctcaaccctctcaaaaccttcacatgctacaacattcat |
41598570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 23916089 - 23916192
Alignment:
| Q |
109 |
tgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacatca |
208 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| | | |||||||||| ||||||| |||||||| ||| ||||||| ||||||| ||||||||||| |
|
|
| T |
23916089 |
tgccatttcctgtatgtctctggcctctcaaccctctgagaaccttcacaggctataatattcattacttccctcccccagaactctttctcaaacatca |
23916188 |
T |
|
| Q |
209 |
acct |
212 |
Q |
| |
|
|||| |
|
|
| T |
23916189 |
acct |
23916192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 554
Target Start/End: Original strand, 23916437 - 23916531
Alignment:
| Q |
460 |
tcatttttccttatcttaaaatcctcaactttgatactttcccaattttttgcaataccattgaactcaaaaggaacaccgaaacgttcgcaata |
554 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||| ||||||| || | ||||||| ||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
23916437 |
tcatttttctttatcttcaagtcctcaactttgatggtttcccatttctgtgcaatagcattgaactcaaacggaacattaaaacgttcacaata |
23916531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 23911557 - 23911611
Alignment:
| Q |
119 |
tatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcat |
173 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||| ||| ||||| |
|
|
| T |
23911557 |
tatatgtctctggcctctcaactctctctaaaccttcacaagctacaacgttcat |
23911611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 22546386 - 22546323
Alignment:
| Q |
109 |
tgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattca |
172 |
Q |
| |
|
||||| |||| |||||||||||||||||| || || |||||||||||||| ||||||||||||| |
|
|
| T |
22546386 |
tgccactgccgatatgtctctggcctctctactctctcacaaccttcacaggctataacattca |
22546323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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