View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8179_low_12 (Length: 281)
Name: NF8179_low_12
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8179_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 48904502 - 48904242
Alignment:
| Q |
20 |
agggatttctgattaccgttggtgctgctgatttatttccaatttatttgtggtaaaccttttttcccatcaccagattttattccattgagtttccttg |
119 |
Q |
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| T |
48904502 |
agggatttctgattaccgttggtgctgctgatttatttccaatttatttgtggtaaaccttttttcccatcaccagattttattccattgagttttcttg |
48904403 |
T |
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| Q |
120 |
ctaagatttttaaggagctaaatggtgtttatgtcaggggacaatctacaatcttaagaagatgacacaaacaaaaatgtt---agagttaatataagta |
216 |
Q |
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| T |
48904402 |
ctaagatttttaaggagctaaatggtgtttatgtcaggggacaatctacaatcttaagaagatgacacaaacaaaaatgttaaaagagttaatataagta |
48904303 |
T |
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| Q |
217 |
aacattttgttctaagcaagaatcatgtcttgtttgattccttaagctattcatctctctc |
277 |
Q |
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| T |
48904302 |
aacattttgttctaagcaagaatcatgtcttgtttgattccttaagctattcatttctctc |
48904242 |
T |
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