View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8179_low_3 (Length: 470)
Name: NF8179_low_3
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8179_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 3600451 - 3600858
Alignment:
| Q |
19 |
gctagtagtatgagaaactgattcactcaatcatttggatggtctttctttctttccttcgttannnnnnnnnnnnnnnggtcaaatatcttagtttcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3600451 |
gctagtagtatgagaaactgattcactcaatcatttggttggtctttctttctttccttcgtt---tttttttttttttggtcaaatatcttagtttcaa |
3600547 |
T |
|
| Q |
119 |
gataaagagatcataaccagcaagtatgatttaatgttatgtctgtaacaggactatgaatatgctagtcacaatcctgtagcgtatgatatagcaaacc |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3600548 |
gatcaagagatcataaccagcaagtatgatttaatgttatgtctgtaacaggactatgaatatgctagtcacaatcctgtagcgtatgatatagcaaacc |
3600647 |
T |
|
| Q |
219 |
acttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctggtatgctacctgtggctttctgaagcattca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3600648 |
acttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctggtatgctacctgtggctttctgaagcattca |
3600747 |
T |
|
| Q |
319 |
ttattttattgtgtcctgtgactgattattttcacgtggctggttctcttgacagatgttgaggagcgtgaaagatttgttaaggcgtatttgaggacct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3600748 |
ttattttattgtgtcctgtgactgattattttcacgtggctggttctcttgacagacgttgaggagcgtgaaagatttgttaaggcgtatttgaggacct |
3600847 |
T |
|
| Q |
419 |
caggtaataga |
429 |
Q |
| |
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||||||||||| |
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| T |
3600848 |
caggtaataga |
3600858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 293
Target Start/End: Complemental strand, 15545906 - 15545775
Alignment:
| Q |
162 |
tgtaacaggactatgaatatgctagtcacaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctca |
261 |
Q |
| |
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||||| |||| ||||| ||||| ||| | ||||| || || |||||||||||||||||||||| ||| ||||||||||| || ||||| ||||| || || |
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| T |
15545906 |
tgtaataggattatgagtatgcaagttataatccagttgcatatgatatagcaaaccacttctctgaaatggctgcaaattatcataccgaaactccaca |
15545807 |
T |
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| Q |
262 |
tattcttgattatagcaaatatcctggtatgc |
293 |
Q |
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|||||| || ||||| |||||||| ||||||| |
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| T |
15545806 |
tattctcgactatagtaaatatcccggtatgc |
15545775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 15326420 - 15326359
Alignment:
| Q |
232 |
ggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctggtatgc |
293 |
Q |
| |
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||||||||| || ||||| ||||| || ||||||||||| ||||| |||||||| ||||||| |
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| T |
15326420 |
ggctgcaaattatcataccgaaactccacatattcttgactatagtaaatatcccggtatgc |
15326359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 15506789 - 15506728
Alignment:
| Q |
232 |
ggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctggtatgc |
293 |
Q |
| |
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||||||||| || ||||| ||||| || ||||||||||| ||||| |||||||| ||||||| |
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|
| T |
15506789 |
ggctgcaaattatcataccgaaactccacatattcttgactatagtaaatatcccggtatgc |
15506728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 14332260 - 14332159
Alignment:
| Q |
189 |
acaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctgg |
288 |
Q |
| |
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|||||||||| |||||||| | ||||| || |||||||| ||||| ||||| ||||| || || ||||||||| ||||||| || || ||||||||||| |
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| T |
14332260 |
acaatcctgttgcgtatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactgacacgcctcatgttcttgactacagtaaatatcctgg |
14332161 |
T |
|
| Q |
289 |
ta |
290 |
Q |
| |
|
|| |
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|
| T |
14332160 |
ta |
14332159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 14425270 - 14425169
Alignment:
| Q |
189 |
acaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctgg |
288 |
Q |
| |
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|||||||||| |||||||| | ||||| || |||||||| ||||| ||||| ||||| || || ||||||||| ||||||| || || ||||||||||| |
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| T |
14425270 |
acaatcctgttgcgtatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactgacacgcctcatgttcttgactacagtaaatatcctgg |
14425171 |
T |
|
| Q |
289 |
ta |
290 |
Q |
| |
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|| |
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|
| T |
14425170 |
ta |
14425169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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