View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8179_low_4 (Length: 436)
Name: NF8179_low_4
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8179_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 161 - 425
Target Start/End: Original strand, 51254690 - 51254954
Alignment:
| Q |
161 |
aaattaagtgctggttaagataatgacnnnnnnnatgcatgtgacagatgataggaattgggtcagtaatgacaacaccactaattgggaatttgtctga |
260 |
Q |
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| T |
51254690 |
aaattaagtgctggttaagataatgactttttttatgcatgtgacagatgataggaattgggtcagtaatgacaacgccactaattgggaatttgtctga |
51254789 |
T |
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| Q |
261 |
ccggtatggcaggaaagccttgatcacacttcctctcactgtctctctcattcctcatggtattattatagtttatgattatgattaattatagagaata |
360 |
Q |
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| T |
51254790 |
ccggtacggcaggaaagccttgatcacacttcctctcactgtctctctcattcctcaaggtattattatagtttatgattatgattaattatagagaata |
51254889 |
T |
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| Q |
361 |
ttaataaccaagttattttctgtcttatcagcttaatttgttaatacattttttctttatttcat |
425 |
Q |
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| T |
51254890 |
ttaataaccaagttattttctgtcttatcagcttaatttgttaatacattttttctttatttcat |
51254954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 51254571 - 51254661
Alignment:
| Q |
73 |
aattttaaatttatcacatgctattcatagtctagtgaaagtggcttttgaagagtgtattaataattaattatttatctatccttcaaaa |
163 |
Q |
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| T |
51254571 |
aattttaaatttatcacatgctattcatagtctagtgaaagtggcttttgaagagtgtattaataattaattatttatctatccttcaaaa |
51254661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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