View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8179_low_5 (Length: 406)
Name: NF8179_low_5
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8179_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 38679463 - 38679831
Alignment:
| Q |
18 |
atcatttcattccactgcttccacccatctaacgctttacgccccacagatacagtttgttgacgaatatcgttacacactgcatcatttcttgctgccc |
117 |
Q |
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| T |
38679463 |
atcatttcattccactgcttccacccatctaacgctttacgccccacagatacagtttgttgacgaatatcgttacacactgcatcatttcttgctgccc |
38679562 |
T |
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| Q |
118 |
ataacttccaaagaagcattatgtagtattagacaaaggaaagaggaatgcaatttgcaaaacaatagtcgcgcatatgacaatcaatgtagttgtgcaa |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38679563 |
ataacttccaaagaagcattatgtagcattagacaaaggaaagaggaatgcaatttgcaaaacaatagtcgcgcatatgacaatcaatgtagttgtgcaa |
38679662 |
T |
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| Q |
218 |
aattaagtacttgtttggtttggcgtttgaagaagagttttccatgtcacacttatctactatttgaagtgctttttacccaaacttgcgttaaccttga |
317 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38679663 |
aattaagttc--------tttggcgtttgaagaagagttttccatgtcacacttatctactatttgaagtgctttttacccaaacttgcgttaaccttga |
38679754 |
T |
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| Q |
318 |
agctagtaatgtagcttatacttcataatgaattgattttagatttattgatggctgatacttttttatcattctct |
394 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
38679755 |
agctagtaatgtagcttatgcgtcataatgaattgattttagatttattgatggcttatacttttttatcgttctct |
38679831 |
T |
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