View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8179_low_8 (Length: 343)

Name: NF8179_low_8
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8179_low_8
NF8179_low_8
[»] chr4 (1 HSPs)
chr4 (46-328)||(48904703-48904985)
[»] chr8 (9 HSPs)
chr8 (130-306)||(10769497-10769669)
chr8 (129-302)||(1948010-1948179)
chr8 (142-302)||(2051987-2052144)
chr8 (152-302)||(2029854-2030001)
chr8 (238-306)||(2034768-2034836)
chr8 (221-302)||(2048093-2048174)
chr8 (234-306)||(2038846-2038918)
chr8 (238-296)||(2059054-2059112)
chr8 (142-306)||(2055840-2056004)
[»] chr2 (3 HSPs)
chr2 (239-290)||(28782875-28782926)
chr2 (235-293)||(28734918-28734976)
chr2 (235-297)||(28742051-28742113)
[»] chr1 (1 HSPs)
chr1 (238-281)||(16441760-16441803)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 46 - 328
Target Start/End: Original strand, 48904703 - 48904985
Alignment:
Q  46 cattactctttaatacataacacaatcatgtggaaccaatgactaactacaccaccacaaacacaccaatggaattttatgagctattttttctctccac 145  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  48904703 catttctctttaatacataacacaatcatgtggaaccgatgactaactacaccaccacaaacacaccaatggaactttatgagctattttttccctccac 48904802  T
Q  146 attgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctccaattgtggtttctct 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904803 attgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctccaattgtggtttctct 48904902  T
Q  246 gtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaa 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904903 gtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaa 48904985  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 130 - 306
Target Start/End: Complemental strand, 10769669 - 10769497
Alignment:
Q  130 tattttttctctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctc 229  Q
    |||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||| | |||||| ||||||| |   | | ||| || |||||||      
T  10769669 tattttttct-tccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttc---aaaataggctacatagtcag 10769574  T
Q  230 caattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggat 306  Q
    ||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  10769573 caactgaggtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggat 10769497  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 302
Target Start/End: Original strand, 1948010 - 1948179
Alignment:
Q  129 ctattttttctctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtct 228  Q
    ||||||||||| |||||| ||| |||||||||| |||||||||| |||| ||||||||| | |||||| |||||||     | ||||| ||||||| ||     
T  1948010 ctattttttct-tccacactgcctagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttt---aaagtaggctgcataatca 1948105  T
Q  229 ccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga 302  Q
     ||| |||||||||||| ||||||| |||||| | ||| |||||||||||||| ||||||||||||||| ||||    
T  1948106 gcaactgtggtttctctatatttggaaggattcttttctgataatagttccttcataggtccatagagctttga 1948179  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 142 - 302
Target Start/End: Complemental strand, 2052144 - 2051987
Alignment:
Q  142 ccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctccaattgtggttt 241  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||| | |||||| |||||||    || ||||| || |||| ||  |||  |  ||||    
T  2052144 ccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctc---gaaagtaggctacataatcagcaacagaagttt 2052048  T
Q  242 ctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga 302  Q
    ||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||| ||||    
T  2052047 ctctgtatttgggaggattgtcttctgatagcagttccttcataggtccatagagctttga 2051987  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 152 - 302
Target Start/End: Complemental strand, 2030001 - 2029854
Alignment:
Q  152 tagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctccaattgtggtttctctgtattt 251  Q
    |||||||||| |||||||||| |||| ||||||||| | |||||| ||||||      | ||||| ||||| | ||  ||| ||||||||||||||||||    
T  2030001 tagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcatt---aaagtaggctgcaaaatcagcaactgtggtttctctgtattt 2029905  T
Q  252 gggaggattgtcttcagataatagttcctttataggtccatagagccttga 302  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||| ||||    
T  2029904 gggaggattgttttctgataatagttccttcataggtccatagagctttga 2029854  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 2034836 - 2034768
Alignment:
Q  238 gtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggat 306  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  2034836 gtttctctgtatttaggaggattgtcttctgataatagttcctttataggtccatagagctttgaggat 2034768  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 2048174 - 2048093
Alignment:
Q  221 catagtctccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga 302  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  2048174 catagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttga 2048093  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 2038918 - 2038846
Alignment:
Q  234 tgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggat 306  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||| ||||||||    
T  2038918 tgtggtttctctgtatttaggaggattgtcttctgataatagatcctttattggtccatagagctttgaggat 2038846  T

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Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 2059112 - 2059054
Alignment:
Q  238 gtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagag 296  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  2059112 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagag 2059054  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 2056004 - 2055840
Alignment:
Q  142 ccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggag-agtagactgcatagtctccaattgtggtt 240  Q
    |||||||||| |||||||||||||||||||  |||  ||||||||| | ||| || ||||||| |   || ||||| || |||| ||  |||  || |||    
T  2056004 ccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgct-cgaaagtagtaggctacataatcagcaacagtagtt 2055906  T
Q  241 tctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggat 306  Q
    ||| ||||||| |||||||||||||| ||||| |||||||| || |||||||||||| ||||||||    
T  2055905 tctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagctttgaggat 2055840  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 28782875 - 28782926
Alignment:
Q  239 tttctctgtatttgggaggattgtcttcagataatagttcctttataggtcc 290  Q
    ||||| |||||||||||||||||||||| ||||| | ||| |||||||||||    
T  28782875 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 28782926  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 28734918 - 28734976
Alignment:
Q  235 gtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccata 293  Q
    ||||||||||| ||| ||||||| |||||||| ||||||| |||  |||||||||||||    
T  28734918 gtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccata 28734976  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 28742051 - 28742113
Alignment:
Q  235 gtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagc 297  Q
    ||||||||||| ||| | ||||| |||||||| ||||| | ||| ||||||||||||||||||    
T  28742051 gtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagc 28742113  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 16441760 - 16441803
Alignment:
Q  238 gtttctctgtatttgggaggattgtcttcagataatagttcctt 281  Q
    |||||||| ||||| | |||||||||||||||||||||||||||    
T  16441760 gtttctctatattttgcaggattgtcttcagataatagttcctt 16441803  T

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