View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8179_low_9 (Length: 337)
Name: NF8179_low_9
Description: NF8179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8179_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 25 - 320
Target Start/End: Original strand, 16424095 - 16424394
Alignment:
| Q |
25 |
gtttggagttggagtgttagaaggtttttaatgattaattattaagattctctaatagtgtaaatggcaatgttaaaccatgtttttacttaattgtagt |
124 |
Q |
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| T |
16424095 |
gtttggagtcggagtgtcagaaggtttttaatgatacattattaagattctctaatagtgtaaatggcaatgttaaaccatgtttttacttgattgtagt |
16424194 |
T |
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| Q |
125 |
actagcagaagtaagcaaatgacataaatgtcatcggttacactatattatc----cnnnnnnnnngttgtactatactctgttaaggaattaattatgt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||||||||||||||| |
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| T |
16424195 |
actagcagaagtaagcaaatgacataaatgtcatcggttacactatattatccacacaaaaaaaaggttgtattatactttgttaaggaattaattatgt |
16424294 |
T |
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| Q |
221 |
taattatcatcactatatggtcgtgacattcattatggtaggtgtttaaagttataatcaggtagtaccatgagaggttgtgtatattcatcatattata |
320 |
Q |
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| T |
16424295 |
taactatcatcattatatggtcgtgacattcattatggtaggtgtttaaagttataatcaggtagtacaatgagaagttgtgtgtattcatcatattata |
16424394 |
T |
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