View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_high_16 (Length: 402)
Name: NF8180A_high_16
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 2701190 - 2701530
Alignment:
| Q |
19 |
ataattattattcttttacgccaacttatattatttgaaaataccttgaactctagccatgatagatttagggttaggcatgttttgcacagaaattgga |
118 |
Q |
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| T |
2701190 |
ataattattattcttttacgccaacttat--tatttgaaaataccttgaactctagcaatgatagatttagggttaggcatgttttgcatagaaattgga |
2701287 |
T |
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| Q |
119 |
aacaaaaaatgggattgaattgaaccgtaccaataattctttcttagtataatttacatagtttcttacatattttgaattaagatatattttgaatgag |
218 |
Q |
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| T |
2701288 |
aacaaaaaatgggattgaattgaaccgtaccaataattctttcttagtataatttacatagtttcttacatattttgaattaagatatattttgaatgac |
2701387 |
T |
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| Q |
219 |
aagcatttgtataatttacaataattatattacaaaatccatcttcagtctccacaacaattgtatttaccaaattctacagtcaaatcttaacctttct |
318 |
Q |
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| T |
2701388 |
aagcatttgtataatttacaata---atattacaaaatccatcttcagtctccacaacaattgtatttaccaaattctacagtcaaatcttaacctttct |
2701484 |
T |
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| Q |
319 |
aaaatttagatctccaaacaaaatttgttggattttaggaaaccaa |
364 |
Q |
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| T |
2701485 |
aaaatttagatctccaaacaaaatttgttggattttaggaaaccaa |
2701530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 2700282 - 2700388
Alignment:
| Q |
258 |
catcttcagtctccacaacaattgtatttaccaaattctacagtcaaatcttaacctttctaaaatttagatctccaaacaaaatttgttggattttagg |
357 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| | || ||||||| ||||||||| |
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| T |
2700282 |
catcttcagtctccacaacaattgtatttaccaaattttacggtcaaatcttaagctttctaaaatttagatctccagaaaatatttgttagattttagg |
2700381 |
T |
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| Q |
358 |
aaaccaa |
364 |
Q |
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||||||| |
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| T |
2700382 |
aaaccaa |
2700388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 2698994 - 2699068
Alignment:
| Q |
181 |
ttcttacatattttgaattaagatatattttgaatgagaagcatttgtataatttacaataattatattacaaaa |
255 |
Q |
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|||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
2698994 |
ttcttatatattttgaattaagacatattttgcatgacaagcatttgtataatttacaatagttatattagaaaa |
2699068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 2698878 - 2698956
Alignment:
| Q |
47 |
tattatttgaaaataccttgaactctagccatgatagatttagggttaggcatgttttgcacagaaattggaaacaaaaa |
126 |
Q |
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| T |
2698878 |
tattacttgaaaataggttgcactctagcaatgttag-tttagagtcaggcatgttttgcatagaaattggaaagaaaaa |
2698956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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