View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_high_18 (Length: 399)
Name: NF8180A_high_18
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 79 - 387
Target Start/End: Complemental strand, 9647059 - 9646753
Alignment:
| Q |
79 |
ttttatttcattgattctctcatagcttgtattcttcctcattttctaacaaagcatcaaacctgtttctttgaactatagtctccatctctttggttct |
178 |
Q |
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| T |
9647059 |
ttttatttcattgattctctcatagcttgtattcttcctcattttctaacaaagcatcaaacctgtttctttgaactatagtctccatctctttggttct |
9646960 |
T |
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| Q |
179 |
acttattcccactttttcaacaagctgagacttgtccttcttagtaagtgaatctatcttatttgctactttttcaactatgataaggttctcaatgttc |
278 |
Q |
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| T |
9646959 |
acttattcccactttttcaacaaggtgagacttgtccttcttagcaagtgaatctatcttatctgcaactttttcaact---ataaggttctcaatgttc |
9646863 |
T |
|
| Q |
279 |
ttcccttattccttcctgtaatctcttctatggacaaactccattctaggg-ctttattagttttcttgttgactactatttcctcttgtggatctgcct |
377 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9646862 |
ttcccttattccttcctgcaatctcttctatggacaaactccattctagggactttattagttttcttgttgactactatttcctcttgtggatctgcct |
9646763 |
T |
|
| Q |
378 |
tgttcatatt |
387 |
Q |
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| T |
9646762 |
tgttcatatt |
9646753 |
T |
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