View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_high_25 (Length: 315)
Name: NF8180A_high_25
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 2035952 - 2035655
Alignment:
| Q |
12 |
aatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2035952 |
aatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccag |
2035853 |
T |
|
| Q |
112 |
aaacaggaagatgttttcttaacgtgtccattctacaaaggaaaagaaattatttcaaattagatagtgcaagtgacagagatggcacaaacacctctga |
211 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2035852 |
aaacgggaagatgttttcttaatgtgtccattctacaaaggaaaagcaattatttcaaattagatagtgcaagtgacagagatggcacaaacacctctga |
2035753 |
T |
|
| Q |
212 |
cacagtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtcggcagtggcttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2035752 |
cacagtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtcggcagtggcttc |
2035655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 1990202 - 1990018
Alignment:
| Q |
12 |
aatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
1990202 |
aatactcgtaatgaatgtacctggcttgccgcatcagtatagatcttatcttcaaacctttgagcaagcttccgaagttcaagtaatccctcagaaccag |
1990103 |
T |
|
| Q |
112 |
aaacaggaagatgttttcttaacgtgtccattctacaaaggaaaagaaattatttcaaa-ttagatagtgcaagtgacagagatg |
195 |
Q |
| |
|
||| |||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
1990102 |
aaataggatgatattttcttaacgtgtccattctacaaaggaaaagcaattacttcaaatttagatagtgcaagtgacagagatg |
1990018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 2021764 - 2021584
Alignment:
| Q |
12 |
aatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccag |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| || |
|
|
| T |
2021764 |
aatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaaatcttatcttcaaacctttgagcaatcttctgaagttcaattaatccctcataactag |
2021665 |
T |
|
| Q |
112 |
aaacaggaagatgttttcttaacgtgtccattctacaaaggaaaagaaattatttcaaa-ttagatagtgcaagtgacaga |
191 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || |||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
2021664 |
aaacaggaagacgttttcttaacgtgtccattctacagagaaaaatcaattatttcaaatttagataatgcaagtgacaga |
2021584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 2019132 - 2018948
Alignment:
| Q |
12 |
aatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||| | |||||||||| |||||||| ||||||| |
|
|
| T |
2019132 |
aatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaatccctcggaaccag |
2019033 |
T |
|
| Q |
112 |
aaacaggaagatgttttcttaacgtgtccattctacaaaggaaaagaaattatttcaaatt-agatagtgcaagtgacagagatg |
195 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| | |||||| |||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
2019032 |
aaacaggaatatgtcttcttaacgtgtccattctacagaagaaaagcaattatttcaaattgagataatgcaactgacagagatg |
2018948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 2018371 - 2018278
Alignment:
| Q |
204 |
acctctgacacagtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtc |
297 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018371 |
acctctgatacaatattgatactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtc |
2018278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 2020933 - 2020836
Alignment:
| Q |
204 |
acctctgacacagtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtcggca |
301 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2020933 |
acctctgacacagtattgacaccaaatcttacatattattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaattgtgtcggca |
2020836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 1989255 - 1989181
Alignment:
| Q |
215 |
agtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatca |
289 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
1989255 |
agtactgacactgaatcttacattttgttgacgattctatggcgttgatcaggttgtatttgagttctccaatca |
1989181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 40911269 - 40911156
Alignment:
| Q |
29 |
tacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccagaaacaggaagatgtttt |
128 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| || |||||||||||||||||| || |
|
|
| T |
40911269 |
tacctggcttgttgcagcagtataaatcttatcttcaaacttttgggcaatcttccgaagttcatgcaatccttcttgaccagaaacaggaagatgcctt |
40911170 |
T |
|
| Q |
129 |
cttaacgtgtccat |
142 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
40911169 |
tttaatgtgtccat |
40911156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 44968718 - 44968831
Alignment:
| Q |
29 |
tacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccagaaacaggaagatgtttt |
128 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| || |||||||||||||||||| || |
|
|
| T |
44968718 |
tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatgcaatccttcttgaccagaaacaggaagatgcctt |
44968817 |
T |
|
| Q |
129 |
cttaacgtgtccat |
142 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
44968818 |
tttaatgtgtccat |
44968831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 44983033 - 44983146
Alignment:
| Q |
29 |
tacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccagaaacaggaagatgtttt |
128 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||| || |||||||||||||||||| || |
|
|
| T |
44983033 |
tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccaaagttcatgcaatccttcttgaccagaaacaggaagatgcctt |
44983132 |
T |
|
| Q |
129 |
cttaacgtgtccat |
142 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
44983133 |
tttaatgtgtccat |
44983146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 44999530 - 44999570
Alignment:
| Q |
215 |
agtattgaaactgaatcttacattttattgacaattctttg |
255 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
44999530 |
agtattaaaactgaaacttacattttgttgacaattctttg |
44999570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University