View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_high_35 (Length: 271)
Name: NF8180A_high_35
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 30267079 - 30267328
Alignment:
| Q |
9 |
tggtgttcgtgtttgggtttgtgcttcatagcaaaatattgtgtttttaagataatgtagtgtgtggttgcttagtataatttgaatgatggt------- |
101 |
Q |
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| T |
30267079 |
tggtgttcgtgtttgggtttgtgcttcatagcaaaatatagtgtttttaagata---tagtgtgtggttgcttagtataatttgaatgatggtgtttttg |
30267175 |
T |
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| Q |
102 |
----gttttgtaatggtaggttcaatggagttgagtttttgttgaagatgaaaggaaaaagtgtgatgtttgttggtgattcgttgggaaggaaccaatg |
197 |
Q |
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| T |
30267176 |
tggtgttttgtaatggcaggttcaatggagttgagtttttgttgaagatgaaaggaaaaagtgtgatgtttgttggtgattcgttaggaaggaaccaatg |
30267275 |
T |
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| Q |
198 |
gcagtctttgatttgtatgatatctgctgcagcacctaatgtggagacacaat |
250 |
Q |
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| T |
30267276 |
gcagtctttgatttgtatgatatctgctgcagcacctaatgtggagacacaat |
30267328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 29365395 - 29365262
Alignment:
| Q |
113 |
gtaggttcaatggagttgagtttttgttgaagatgaaaggaaaaagtgtgatgtttgttggtgattcgttgggaaggaaccaatggcagtctttgatttg |
212 |
Q |
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| T |
29365395 |
gtaggttcaacggagttgagtttctgatgaagatgaaaggaaaaaatgtgatgtttgttggtgattcgttaggaaggaaccaatggcagtctttgattta |
29365296 |
T |
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| Q |
213 |
tatgatatctgctgcagcacctaatgtggagaca |
246 |
Q |
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| T |
29365295 |
tatgatatctgctgcagcacctcgtgtggagaca |
29365262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 25959220 - 25959326
Alignment:
| Q |
114 |
taggttcaatggagttgagtttttgttgaagatgaaaggaaaaagtgtgatgtttgttggtgattcgttgggaaggaaccaatggcagtctttgatttgt |
213 |
Q |
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|||||||||||||||| ||||| || || ||||| ||||||||| | ||||||||||||||||| ||||| ||||| |||||| | || ||||||||| |
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| T |
25959220 |
taggttcaatggagttcagtttctgatgggaatgaagggaaaaagtataatgtttgttggtgattctttggggaggaatcaatgggaatcattgatttgt |
25959319 |
T |
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| Q |
214 |
atgatat |
220 |
Q |
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||||||| |
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| T |
25959320 |
atgatat |
25959326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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