View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_high_42 (Length: 230)
Name: NF8180A_high_42
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 8401095 - 8400940
Alignment:
| Q |
74 |
agagctaaaatagatatgtcctctataattatttgatctacgtaattttt-aattgaaataaagttgcaatgaaatatcttttgagttaaatcatgaaat |
172 |
Q |
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| T |
8401095 |
agagctaaaatagatatgtcctctataattatttgatctacgtaattttttaattgcaataaagttgcaatgaaatatcttttgagttaaatcatgaaat |
8400996 |
T |
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| Q |
173 |
gttttatttattttttaaaatttacttctgagaaacttctttcctcaggccctcct |
228 |
Q |
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| T |
8400995 |
gttttatttattttttaaaatttacttctgagaaacttctttcctcaggccctcct |
8400940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8401202 - 8401113
Alignment:
| Q |
1 |
gggggatgactgaattgttatttcaaaatatttgagagactaaattattattattattttaataataattttcagagctaaaatagatat |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
8401202 |
gggggatgactgaattgttatttcaaaatatttgagagactaaattattattattattattttaataattttcagagctaaaatagatat |
8401113 |
T |
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