View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_high_45 (Length: 225)
Name: NF8180A_high_45
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37704486 - 37704701
Alignment:
| Q |
1 |
aattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcata |
100 |
Q |
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| T |
37704486 |
aattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcata |
37704585 |
T |
|
| Q |
101 |
gaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataa |
200 |
Q |
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| T |
37704586 |
gaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataa |
37704685 |
T |
|
| Q |
201 |
gataacaaattcattt |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
37704686 |
gataacaaattcattt |
37704701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 37699008 - 37699226
Alignment:
| Q |
2 |
attgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatag |
101 |
Q |
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| T |
37699008 |
attgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatag |
37699107 |
T |
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| Q |
102 |
aaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---a |
197 |
Q |
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| T |
37699108 |
aaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataa |
37699207 |
T |
|
| Q |
198 |
taagataacaaattcattt |
216 |
Q |
| |
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||||||||||||||||||| |
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| T |
37699208 |
taagataacaaattcattt |
37699226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 37437584 - 37437766
Alignment:
| Q |
34 |
ggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatat |
133 |
Q |
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|||||||||||||||| | |||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
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| T |
37437584 |
ggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacat |
37437683 |
T |
|
| Q |
134 |
cttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataagataacaaattcattt |
216 |
Q |
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| T |
37437684 |
attggaagaccaagacttttcgaacgtaattagc----aagttggaatcttattgcaagttgtgataataagataacaaattcattt |
37437766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 37698732 - 37698863
Alignment:
| Q |
90 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta----gcacgaaagttggaatctta |
184 |
Q |
| |
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|||| |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta |
37698831 |
T |
|
| Q |
185 |
tttcaagttgtgataagataacaaattcattt |
216 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |
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|
| T |
37698832 |
ttgcaagttgtgataagataacaaattcattt |
37698863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 16841109 - 16841007
Alignment:
| Q |
97 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
195 |
Q |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
196 |
gata |
199 |
Q |
| |
|
|||| |
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|
| T |
16841010 |
gata |
16841007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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