View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_high_49 (Length: 207)
Name: NF8180A_high_49
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_high_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 42581593 - 42581426
Alignment:
| Q |
18 |
aatatagtgattttaaatctaatacagaagtagaaataatnnnnnnnnnnntgatgaaatattcagtagtattaataatgaacattataagcacctgaag |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42581593 |
aatacagtgattttaaatctaatacagaagtagaaataataaaaaaaaa--tgatgaaatattcagtagtattaataatgaacattataagcacctgaag |
42581496 |
T |
|
| Q |
118 |
gaagagaatgaaattcacttcccagagtaggagcatcattcagcaacacggtgttcacaatgccacctgt |
187 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
42581495 |
gaagagaatcaaattcacttcccagagtaggagcatcattgagcaacacggtgttcacaatgtcacctgt |
42581426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University