View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_high_53 (Length: 201)
Name: NF8180A_high_53
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 17658670 - 17658619
Alignment:
| Q |
44 |
aaacaaccaaaatttattaaccgctacatctgcacaagacgcatagagcaag |
95 |
Q |
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| T |
17658670 |
aaacaaccaaaatttattaaccgctacatctgcacaagacgcacagagcaag |
17658619 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 17658589 - 17658539
Alignment:
| Q |
125 |
gcgtctatcacgttcatacaagtttgtctgacaaacctgtttaccccaacc |
175 |
Q |
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| T |
17658589 |
gcgtctatcacgtttgtacaagtttgtatgacaaacctgtttaccccaacc |
17658539 |
T |
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