View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_high_8 (Length: 471)

Name: NF8180A_high_8
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_high_8
NF8180A_high_8
[»] chr8 (1 HSPs)
chr8 (7-461)||(21360736-21361190)
[»] chr5 (5 HSPs)
chr5 (19-194)||(18680089-18680264)
chr5 (210-380)||(18679857-18680030)
chr5 (59-174)||(7316353-7316467)
chr5 (209-259)||(27297448-27297498)
chr5 (340-396)||(7316098-7316154)
[»] chr1 (3 HSPs)
chr1 (211-421)||(26131163-26131376)
chr1 (16-103)||(26131041-26131129)
chr1 (20-96)||(32342332-32342409)
[»] chr2 (3 HSPs)
chr2 (68-177)||(15127775-15127882)
chr2 (211-257)||(15127655-15127701)
chr2 (59-136)||(21470077-21470153)
[»] chr3 (1 HSPs)
chr3 (131-177)||(40142953-40142999)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Complemental strand, 21361190 - 21360736
Alignment:
Q  7 ggagctacctgtcaaattagcatactgaacaaagtgttctgtaatagaacatggtcaattgatgagaaacccaaccaatcacgaaccagattccaaagag 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21361190 ggagctacctgtcaaattagcatactgaacaaagtgttcagtaatagaacatggtcaattgatgagaaacccaaccaatcacgaaccagattccaaagag 21361091  T
Q  107 agcaaataaaaattacaatttaagaacaaatggtttgtcatttccacctcacaacacacactcacacaaagatggttgtcattagtaacatcaacatgtt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  21361090 agcaaataaaaattacaatttaagaacaaatggtttgtcatttccacctcacaacacacactcacataaagatggttgtcattagtaacatcaacatgtc 21360991  T
Q  207 taaccaagcaaaaattgaaaccttcagaggaacgtctttatgccaaatcaaatatgaaactgtggaagaacgttgcacttgcgagctagtgtttacgtaa 306  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21360990 tgaccaagcaaaaattgaaaccttctgaggaacgtctttatgccaaatcaaatatgaaactgtggaagaacgttgcacttgcgagctagtgtttacgtaa 21360891  T
Q  307 gcattgcggacagagtaaacatcgttccagtccaactgccacatccacttatcgtcattttcaacttgtaaatgcacattagaaagaaaaactgagcact 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  21360890 gcattgcggacagagtaaacatcgttccagtccaactgccacatccacttatcatcattttcaacttgcaaatgcacattagaaagaaaaactgagcact 21360791  T
Q  407 cctcaaccaactccttctctcacgccaacaaacgacacccaccttatgagtataa 461  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  21360790 cctcagccaactcattctcccacgccaacaaacgacacccaccttacgagtataa 21360736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 18680264 - 18680089
Alignment:
Q  19 caaattagcatactgaacaaagtgttctgtaatagaacatgg-tcaattgatgagaaacccaaccaatcacgaaccagattccaaagagagcaaataaaa 117  Q
    ||||| |||||| |||||||||||||| ||||||||||  || ||||  ||| | |||||||||||||||||||||| |||||||||||||| || ||||    
T  18680264 caaatgagcatattgaacaaagtgttccgtaatagaacgggggtcaaccgataataaacccaaccaatcacgaaccatattccaaagagagccaa-aaaa 18680166  T
Q  118 attacaatttaagaacaaatggtttgtcatttccacctcacaacacacactcacacaaagatggttgtcattagtaa 194  Q
    ||||||||||| |||||||||   |||| ||||||||||||||||| |||||| |||||| || | |||||||||||    
T  18680165 attacaatttaggaacaaatgacatgtcgtttccacctcacaacacccactcaaacaaagctgatcgtcattagtaa 18680089  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 380
Target Start/End: Complemental strand, 18680030 - 18679857
Alignment:
Q  210 ccaagcaaaaattgaaaccttcagaggaacgtctttatgccaaatcaaatatgaaactgtggaagaacgttgcacttgcgagctagtgtttac---gtaa 306  Q
    |||| |||||| |||||| |||| |||||| ||||||||||||||||||| |||||||| ||||| || |    ||||||||||| ||   |    ||||    
T  18680030 ccaaacaaaaactgaaactttcaaaggaacatctttatgccaaatcaaatctgaaactgcggaaggacatcaagcttgcgagctaatgagaaaaaggtaa 18679931  T
Q  307 gcattgcggacagagtaaacatcgttccagtccaactgccacatccacttatcgtcattttcaacttgtaaatg 380  Q
    |||| ||||||| |||||||||||| ||||||||||| ||||| ||||||||| ||| ||||||| || |||||    
T  18679930 gcatcgcggacatagtaaacatcgtcccagtccaacttccacacccacttatcatcagtttcaacctgcaaatg 18679857  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 7316467 - 7316353
Alignment:
Q  59 ggtcaattgatgagaaacccaaccaatcacgaaccagattccaaagag-agcaaataaaaattacaatttaagaacaaatggtttgtcatttccacctca 157  Q
    |||||| ||||  ||||| |||||| | | ||||||||| |||||||| | ||||  || ||||||||| | ||||||||| ||||||||||||||||||    
T  7316467 ggtcaactgatatgaaactcaaccatttatgaaccagataccaaagagtatcaaa--aatattacaattaaggaacaaatgatttgtcatttccacctca 7316370  T
Q  158 caacacacactcacaca 174  Q
    | ||||  |||||||||    
T  7316369 ctacacctactcacaca 7316353  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 27297448 - 27297498
Alignment:
Q  209 accaagcaaaaattgaaaccttcagaggaacgtctttatgccaaatcaaat 259  Q
    ||||||||||||| || |||||||||||||| | | |||||||||||||||    
T  27297448 accaagcaaaaatagacaccttcagaggaacttgtgtatgccaaatcaaat 27297498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 7316154 - 7316098
Alignment:
Q  340 aactgccacatccacttatcgtcattttcaacttgtaaatgcacattagaaagaaaa 396  Q
    |||||||| | |||| |||||||| | ||||| || |||||||||||||||||||||    
T  7316154 aactgccatagccacatatcgtcagtgtcaacctgcaaatgcacattagaaagaaaa 7316098  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 211 - 421
Target Start/End: Original strand, 26131163 - 26131376
Alignment:
Q  211 caagcaaaaattgaaaccttcagaggaacgtctttatgccaaatcaaatatgaaactgtggaagaacgttgcacttgcgagctagtg---tttacgtaag 307  Q
    |||||||||| |||||| |||| |||||  || ||||| |||||||||| |||||||   |||| | ||||| ||||||||||| ||   |  | |||||    
T  26131163 caagcaaaaactgaaacattcaaaggaagatccttatgtcaaatcaaatctgaaactacagaaggatgttgcgcttgcgagctattgagataaaggtaag 26131262  T
Q  308 cattgcggacagagtaaacatcgttccagtccaactgccacatccacttatcgtcattttcaacttgtaaatgcacattagaaagaaaaactgagcactc 407  Q
    || |  ||||| ||||||| |||| || |||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||  ||||||||    
T  26131263 cactatggacaaagtaaacctcgtcccggtccaactgccacacccacttatcgttagtatcaacttgtaaatgcacattagaaagaaaaatcgagcactc 26131362  T
Q  408 ctcaaccaactcct 421  Q
    | ||||||||||||    
T  26131363 cccaaccaactcct 26131376  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 26131041 - 26131129
Alignment:
Q  16 tgtcaaattagcatactgaacaaagtgttctgtaatagaacatgg-tcaattgatgagaaacccaaccaatcacgaaccagattccaaa 103  Q
    |||||||| || |||||||||| |||||||  |||||||||| || ||||  ||||||||||||||||||||||||||  |||||||||    
T  26131041 tgtcaaatgagaatactgaacacagtgttccataatagaacaggggtcaaccgatgagaaacccaaccaatcacgaactggattccaaa 26131129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 32342332 - 32342409
Alignment:
Q  20 aaattagcatactgaacaaagtgttctgtaatagaac-atggtcaattgatgagaaacccaaccaatcacgaaccaga 96  Q
    ||||||||||| |||||||| || | || |||||||| | |||||| ||| ||||| |||| ||||||||||||||||    
T  32342332 aaattagcataatgaacaaaatgatatgaaatagaactagggtcaactgaagagaaccccagccaatcacgaaccaga 32342409  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 15127882 - 15127775
Alignment:
Q  68 atgagaaacccaaccaatcacgaaccagattccaaagagagcaaataaaaattacaatttaagaacaaatggtttgtcatttccacctcacaacacacac 167  Q
    |||||||||||||||||||||||||||||| ||||||||||   | ||| ||||||||||| |||| |||| |||| |  ||| |||||||||||| |||    
T  15127882 atgagaaacccaaccaatcacgaaccagataccaaagagaggcta-aaacattacaatttaggaac-aatgatttgccgattcaacctcacaacactcac 15127785  T
Q  168 tcacacaaag 177  Q
    ||||||||||    
T  15127784 tcacacaaag 15127775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 15127701 - 15127655
Alignment:
Q  211 caagcaaaaattgaaaccttcagaggaacgtctttatgccaaatcaa 257  Q
    ||||||||||| |||||||||| |||||| || ||||||||||||||    
T  15127701 caagcaaaaatagaaaccttcaaaggaacatccttatgccaaatcaa 15127655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 21470153 - 21470077
Alignment:
Q  59 ggtcaattgatgagaaacccaaccaatcacgaaccagattccaaagagagcaaataaaaattacaatttaagaacaaa 136  Q
    |||||| | |||| |||||||||||| ||||||||| || ||||||||| |||| |||||| |||||| | |||||||    
T  21470153 ggtcaactaatgaaaaacccaaccaagcacgaaccatataccaaagagaacaaa-aaaaatgacaattcaggaacaaa 21470077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 40142953 - 40142999
Alignment:
Q  131 aacaaatggtttgtcatttccacctcacaacacacactcacacaaag 177  Q
    ||||||||||||||| |||||||||| | |||| |||||||||||||    
T  40142953 aacaaatggtttgtcgtttccacctccctacacccactcacacaaag 40142999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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