View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_10 (Length: 476)
Name: NF8180A_low_10
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 32064444 - 32064901
Alignment:
| Q |
13 |
aatattaacagggcgtcctgcagcttgagcgcatagtttagctattccatttagagtcaccgcacggtcactcacacagttgaaaatgctatgatttgca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064444 |
aatattaacagggcgtcctgcagcttgagcgcatagtttagctattccatttagagtcaccgcacggtcactcacacagttgaaaatgctatgatttgca |
32064543 |
T |
|
| Q |
113 |
gcatccgggttctcaacagctagagtcaacattgaagacaagtctttaacatgagatatgttagtgagttgcaatcctgaaccaggaattagcacaggtc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064544 |
gcatccgggttctcaacagctagagtcaacattgaagacaagtctttaacatgagatatgttagtgagttgcaatcctgaaccaggaattagcacaggtc |
32064643 |
T |
|
| Q |
213 |
tgtcccgaacaatccctacaaatggcaatatacatttcttttagaagttctaaattagcataaaaatttcagagtnnnnnnnngcttcatgtggattaga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
32064644 |
tgtcccgaacaatccctacaaatggcaatatacatttcttttagaagttctaaattagcataaaaatttcagagtaaaaaaaagcttcatatggattaga |
32064743 |
T |
|
| Q |
313 |
gttttaaaataaagcttgttttaagaattttcccacttactgtcaaagaaccactcctcacagtctttgttgtttccagaccctgtcatatactgaggcc |
412 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064744 |
ggtttaaaataaagcttgctttaagaattttcccacttactgtcaaagaaccactcctcacagtctttgttgtttccagaccctgtcatatactgaggcc |
32064843 |
T |
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| Q |
413 |
tgaatactgcccaactgtcaaaagtttcttcaatgtatttctcaactccaacatgacc |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064844 |
tgaatactgcccaactgtcaaaagtttcttcaatgtatttctcaactccaacatgacc |
32064901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 51280696 - 51280848
Alignment:
| Q |
17 |
ttaacagggcgtcctgcagcttgagcgcatagtttagctattccatttagagtcaccgcacggtcactcacacagttgaaaatgctatgatttgcagcat |
116 |
Q |
| |
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||||||||||| |||||||| | || | |||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||| |||| ||||||||| |
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| T |
51280696 |
ttaacagggcgccctgcagcctaagtacgtagtttagctattccatttagaatcactgcaaggtcactcacgcagttgaaaatgccatgacttgcagcat |
51280795 |
T |
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| Q |
117 |
ccgggttctcaacagctagagtcaacattgaagacaagtctttaacatgagat |
169 |
Q |
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| | ||||||||||||||||||| ||| || || |||||||||||||||||| |
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| T |
51280796 |
ctgaattctcaacagctagagtcagcatcgacgataagtctttaacatgagat |
51280848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 24917798 - 24917744
Alignment:
| Q |
315 |
tttaaaataaagcttgttttaagaattttcccacttactgtcaaagaaccactcct |
370 |
Q |
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|||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |
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| T |
24917798 |
tttaaaataaagcttggttta-gaattttcccacttactatcaaagaaccactcct |
24917744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 1081224 - 1081170
Alignment:
| Q |
315 |
tttaaaataaagcttgttttaagaattttcccacttactgtcaaagaaccactcct |
370 |
Q |
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||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||| |
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| T |
1081224 |
tttaaaataaaatttggttta-gaattttcccacttactatcaaagaaccactcct |
1081170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 7744849 - 7744795
Alignment:
| Q |
315 |
tttaaaataaagcttgttttaagaattttcccacttactgtcaaagaaccactcct |
370 |
Q |
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|||||||||||||||| |||| ||||||||||||||||| ||| |||||||||||| |
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| T |
7744849 |
tttaaaataaagcttggttta-gaattttcccacttactatcagagaaccactcct |
7744795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 15339784 - 15339730
Alignment:
| Q |
315 |
tttaaaataaagcttgttttaagaattttcccacttactgtcaaagaaccactcct |
370 |
Q |
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|||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||| |
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| T |
15339784 |
tttaaaataaagtttggttta-gaattttcccacttactatcaaagaaccactcct |
15339730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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